Gene expression profile analysis of rat cerebellum under acute alcohol intoxication.

作者: Yu Zhang , Guangkuan Wei , Yuehong Wang , Ling Jing , Qingjie Zhao

DOI: 10.1016/J.GENE.2014.12.032

关键词: GenePromoterGene expressionGene expression profilingBiologyPharmacologyMicroarrayTranscription factorReal-time polymerase chain reactionBiological pathway

摘要: Acute alcohol intoxication, a common disease causing damage to the central nervous system (CNS) has been primarily studied on aspects of addiction and chronic exposure. The understanding gene expression change in CNS during acute intoxication is still lacking. We established model for SD rats by oral gavage. A rat cDNA microarray was used profile mRNA cerebella alcohol-intoxicated (experimental group) saline-treated (control group). total 251 differentially expressed genes were identified response which 208 them up-regulated 43 down-regulated. Gene ontology (GO) term enrichment analysis pathway revealed that involved biological processes immune endothelial integrity are among most severely affected intoxication. discovered five transcription factors whose consensus binding motifs overrepresented promoter region genes. Additionally, we 20 highly connected hub co-expression analysis, validated differential these real-time quantitative PCR. By determining novel pathways have functional implication our study substantially contributes molecular mechanism underlying pathology alcoholism.

参考文章(42)
L. Hipolito, M. Sanchez, A. Polache, L. Granero, Brain Metabolism of Ethanol and Alcoholism: An Update Current Drug Metabolism. ,vol. 8, pp. 716- 727 ,(2007) , 10.2174/138920007782109797
Johanne Cochrane, Hanhui Chen, Katherine M Conigrave, Wei Hao, Alcohol use in China. Alcohol and Alcoholism. ,vol. 38, pp. 537- 542 ,(2003) , 10.1093/ALCALC/AGG111
Shelli L. Kirstein, Kirsten L. Davidson, Marissa A. Ehringer, James M. Sikela, V. Gene Erwin, Boris Tabakoff, Quantitative Trait Loci Affecting Initial Sensitivity and Acute Functional Tolerance to Ethanol-Induced Ataxia and Brain cAMP Signaling in BXD Recombinant Inbred Mice Journal of Pharmacology and Experimental Therapeutics. ,vol. 302, pp. 1238- 1245 ,(2002) , 10.1124/JPET.302.3.1238
T. L. Bailey, M. Boden, F. A. Buske, M. Frith, C. E. Grant, L. Clementi, J. Ren, W. W. Li, W. S. Noble, MEME Suite: tools for motif discovery and searching Nucleic Acids Research. ,vol. 37, pp. 202- 208 ,(2009) , 10.1093/NAR/GKP335
Da Wei Huang, Brad T Sherman, Richard A Lempicki, Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nature Protocols. ,vol. 4, pp. 44- 57 ,(2009) , 10.1038/NPROT.2008.211
Robnet T Kerns, Ajay Ravindranathan, Sajida Hassan, Mary P Cage, Tim York, James M Sikela, Robert W Williams, Michael F Miles, Ethanol-Responsive Brain Region Expression Networks: Implications for Behavioral Responses to Acute Ethanol in DBA/2J versus C57BL/6J Mice The Journal of Neuroscience. ,vol. 25, pp. 2255- 2266 ,(2005) , 10.1523/JNEUROSCI.4372-04.2005
Jodie P. Goodridge, Aura Burian, Ni Lee, Daniel E. Geraghty, HLA-F Complex without Peptide Binds to MHC Class I Protein in the Open Conformer Form Journal of Immunology. ,vol. 184, pp. 6199- 6208 ,(2010) , 10.4049/JIMMUNOL.1000078
Boris Tabakoff, Sanjiv V. Bhave, Paula L. Hoffman, Selective Breeding, Quantitative Trait Locus Analysis, and Gene Arrays Identify Candidate Genes for Complex Drug-Related Behaviors The Journal of Neuroscience. ,vol. 23, pp. 4491- 4498 ,(2003) , 10.1523/JNEUROSCI.23-11-04491.2003
Zaridze D G, Khvastiuk Mg, Davydov Mi, Maksimovich Dm, Lazarev Af, Boroda Am, Igitov Vi, Analysis of mortality in Russian population Vestnik Rossiĭskoĭ akademii meditsinskikh nauk / Rossiĭskaia akademiia meditsinskikh nauk. pp. 17- 27 ,(2007)
Mariko Saito, John Smiley, Reka Toth, Csaba Vadasz, Microarray Analysis of Gene Expression in Rat Hippocampus After Chronic Ethanol Treatment Neurochemical Research. ,vol. 27, pp. 1221- 1229 ,(2002) , 10.1023/A:1020937728506