Effect of Polymer Conjugation Site on Stability and Self-Assembly of Coiled Coils

作者: Elham Hamed , Dan Ma , Sinan Keten

DOI: 10.1007/S12668-015-0172-Y

关键词: Molecular dynamicsConjugateNanotechnologyBiophysicsSupramolecular chemistryConjugated systemPolymerThermal stabilityMaterials scienceSelf-assemblyCoiled coil

摘要: Conjugation of proteins with polymers has emerged as a new design technique to produce hybrid block copolymers tailored hierarchical structures and desirable functionalities well greater stability. However, due the sequence chemistry dependence conjugation effects, it remains challenging understand overall effect location polymer on supramolecular organization. As step toward addressing this issue, here, we report coarse-grained molecular dynamics simulations organization coiled coil assemblies terminal side-chain conjugated alpha-helices. Our indicate that helicity thermal stability are preserved for both side end conjugation, but steric hindrance by chains influences aggregation patterns coils in different ways, depending location. The number assembled clusters decreases upon is more pronounced compared conjugation. results explain recent experimental findings peptide-polymer conjugates lay groundwork protein enhanced thermomechanical controlled behavior environmental conditions.

参考文章(45)
H C Hurst, Transcription factors 1: bZIP proteins. Protein Profile. ,vol. 2, pp. 101- 168 ,(1995)
Matthew R. Berwick, David J. Lewis, Andrew W. Jones, Rosemary A. Parslow, Timothy R. Dafforn, Helen J. Cooper, John Wilkie, Zoe Pikramenou, Melanie M. Britton, Anna F. A. Peacock, De Novo Design of Ln(III) Coiled Coils for Imaging Applications Journal of the American Chemical Society. ,vol. 136, pp. 1166- 1169 ,(2014) , 10.1021/JA408741H
Eliana De Bernardez Clark, Protein refolding for industrial processes. Current Opinion in Biotechnology. ,vol. 12, pp. 202- 207 ,(2001) , 10.1016/S0958-1669(00)00200-7
David Baker, A surprising simplicity to protein folding Nature. ,vol. 405, pp. 39- 42 ,(2000) , 10.1038/35011000
Jessica Y. Shu, Yu-Ja Huang, Cen Tan, Andrew D. Presley, Joseph Chang, Ting Xu, Amphiphilic peptide-polymer conjugates based on the coiled-coil helix bundle. Biomacromolecules. ,vol. 11, pp. 1443- 1452 ,(2010) , 10.1021/BM100009E
Theodor Ackbarow, Sinan Keten, Markus J Buehler, A multi-timescale strength model of alpha-helical protein domains Journal of Physics: Condensed Matter. ,vol. 21, pp. 035111- ,(2009) , 10.1088/0953-8984/21/3/035111
Rahul S. Rajan, Tiansheng Li, Mohini Aras, Christopher Sloey, Weston Sutherland, Hiromi Arai, Robert Briddell, Olaf Kinstler, Alexis M.K. Lueras, Yu Zhang, Heather Yeghnazar, Michael Treuheit, David N. Brems, Modulation of protein aggregation by polyethylene glycol conjugation: GCSF as a case study. Protein Science. ,vol. 15, pp. 1063- 1075 ,(2006) , 10.1110/PS.052004006
Massimiliano Bonomi, Davide Branduardi, Giovanni Bussi, Carlo Camilloni, Davide Provasi, Paolo Raiteri, Davide Donadio, Fabrizio Marinelli, Fabio Pietrucci, Ricardo A. Broglia, Michele Parrinello, PLUMED: a portable plugin for free-energy calculations with molecular dynamics Computer Physics Communications. ,vol. 180, pp. 1961- 1972 ,(2009) , 10.1016/J.CPC.2009.05.011
Valerie Daggett, Peter A. Kollman, Irwin D. Kuntz, A molecular dynamics simulation of polyalanine: an analysis of equilibrium motions and helix-coil transitions. Biopolymers. ,vol. 31, pp. 1115- 1134 ,(1991) , 10.1002/BIP.360310911