Transitioning Diagnostic Molecular Pathology to the Genomic Era: Cancer Somatic Mutation Panel Testing

作者: Kitchener D. Wilson , Iris Schrijver

DOI: 10.1007/978-1-4899-8050-2_1

关键词: Molecular pathologyBioinformaticsMolecular complexityGenotypingMedicineGermline mutationDNA sequencerCancer genomeSnapshot (computer storage)Cytogenetics

摘要: The ongoing discovery and validation of cancer molecular biomarkers, as well their use in the design targeted therapies, is shifting oncology from tissue- disease-based treatments to target-based protocols. Conventional methods genotyping (e.g., cytogenetics, FISH, PCR) are often insufficient for efficiently capturing complexity genome, while next-generation sequencing (NGS), which promises revolutionize field, still needs several more years maturation before it ready generalized clinical use. To bridge this divide between traditional assays coming NGS era, relatively simple multiplexed diagnostic have been developed that existing techniques provide high-content information an efficient cost-effective manner. One example such approach SNaPshot, a robust highly sensitive tumor technique whose only major instrumentation requirement capillary electrophoresis-automated DNA sequencer. In chapter, we will assay current high-throughput during transition pathology genomic era.

参考文章(24)
Laura E. MacConaill, Levi A. Garraway, Clinical Implications of the Cancer Genome Journal of Clinical Oncology. ,vol. 28, pp. 5219- 5228 ,(2010) , 10.1200/JCO.2009.27.4944
N Knijn, L J M Mekenkamp, M Klomp, M E Vink-Börger, J Tol, S Teerenstra, J W R Meijer, M Tebar, S Riemersma, J H J M van Krieken, C J A Punt, I D Nagtegaal, KRAS mutation analysis: a comparison between primary tumours and matched liver metastases in 305 colorectal cancer patients British Journal of Cancer. ,vol. 104, pp. 1020- 1026 ,(2011) , 10.1038/BJC.2011.26
M. R. Stratton, Exploring the Genomes of Cancer Cells: Progress and Promise Science. ,vol. 331, pp. 1553- 1558 ,(2011) , 10.1126/SCIENCE.1204040
Janet E. Dancey, Philippe L. Bedard, Nicole Onetto, Thomas J. Hudson, The Genetic Basis for Cancer Treatment Decisions Cell. ,vol. 148, pp. 409- 420 ,(2012) , 10.1016/J.CELL.2012.01.014
Gini F. Fleming, Michael W. Sill, Kathleen M. Darcy, D. Scott McMeekin, J. Tate Thigpen, Lisa M. Adler, Jonathan S. Berek, Julia A. Chapman, Paul A. DiSilvestro, Ira R. Horowitz, James V. Fiorica, Phase II trial of trastuzumab in women with advanced or recurrent, HER2-positive endometrial carcinoma: a Gynecologic Oncology Group study. Gynecologic Oncology. ,vol. 116, pp. 15- 20 ,(2010) , 10.1016/J.YGYNO.2009.09.025
Anne L. Estep, Chana Palmer, Frank McCormick, Katherine A. Rauen, Mutation Analysis of BRAF, MEK1 and MEK2 in 15 Ovarian Cancer Cell Lines: Implications for Therapy PLoS ONE. ,vol. 2, pp. e1279- ,(2007) , 10.1371/JOURNAL.PONE.0001279
Peter J. Campbell, Shinichi Yachida, Laura J. Mudie, Philip J. Stephens, Erin D. Pleasance, Lucy A. Stebbings, Laura A. Morsberger, Calli Latimer, Stuart McLaren, Meng-Lay Lin, David J. McBride, Ignacio Varela, Serena A. Nik-Zainal, Catherine Leroy, Mingming Jia, Andrew Menzies, Adam P. Butler, Jon W. Teague, Constance A. Griffin, John Burton, Harold Swerdlow, Michael A. Quail, Michael R. Stratton, Christine Iacobuzio-Donahue, P. Andrew Futreal, The patterns and dynamics of genomic instability in metastatic pancreatic cancer Nature. ,vol. 467, pp. 1109- 1113 ,(2010) , 10.1038/NATURE09460
Yung-Jue Bang, Eric Van Cutsem, Andrea Feyereislova, Hyun C Chung, Lin Shen, Akira Sawaki, Florian Lordick, Atsushi Ohtsu, Yasushi Omuro, Taroh Satoh, Giuseppe Aprile, Evgeny Kulikov, Julie Hill, Michaela Lehle, Josef Rüschoff, Yoon-Koo Kang, None, Trastuzumab in combination with chemotherapy versus chemotherapy alone for treatment of HER2-positive advanced gastric or gastro-oesophageal junction cancer (ToGA): a phase 3, open-label, randomised controlled trial The Lancet. ,vol. 376, pp. 687- 697 ,(2010) , 10.1016/S0140-6736(10)61121-X
Carlos L. Arteaga, José Baselga, Impact of genomics on personalized cancer medicine. Clinical Cancer Research. ,vol. 18, pp. 612- 618 ,(2012) , 10.1158/1078-0432.CCR-11-2019
Steven JM Jones, Janessa Laskin, Yvonne Y Li, Obi L Griffith, Jianghong An, Mikhail Bilenky, Yaron S Butterfield, Timothee Cezard, Eric Chuah, Richard Corbett, Anthony P Fejes, Malachi Griffith, John Yee, Montgomery Martin, Michael Mayo, Nataliya Melnyk, Ryan D Morin, Trevor J Pugh, Tesa Severson, Sohrab P Shah, Margaret Sutcliffe, Angela Tam, Jefferson Terry, Nina Thiessen, Thomas Thomson, Richard Varhol, Thomas Zeng, Yongjun Zhao, Richard A Moore, David G Huntsman, Inanc Birol, Martin Hirst, Robert A Holt, Marco A Marra, None, Evolution of an adenocarcinoma in response to selection by targeted kinase inhibitors Genome Biology. ,vol. 11, pp. 1- 12 ,(2010) , 10.1186/GB-2010-11-8-R82