The rainbow trout genome, an important landmark for aquaculture and genome evolution

作者: Julien Bobe , Lucie Marandel , Stéphane Panserat , Pierre Boudinot , Camille Berthelot

DOI: 10.1016/B978-0-12-801418-9.00002-0

关键词: EcologyGenomicsEvolutionary biologyDNA sequencingBiologyGenome evolutionIntroduced speciesRainbow troutWhole genome sequencingGenomeAquaculture

摘要: Rainbow trout is a native species from the Northwest cost of North America and member salmonid family. It major importance for aquaculture, wild stock fisheries recreational sport fisheries. Beside its economical importance, rainbow also extensively used as model in many biological disciplines. From an evolutionary genomic point view, genome extremely interesting due to whole duplication event, which occurred 88–96 Mya lineage. With advent next generation sequencing technologies, large number tools are now available that including sequence. This chapter provides synthetic review current knowledge on genomics what information has been obtained following analysis genome.

参考文章(107)
Paul D. Etter, Susan Bassham, Paul A. Hohenlohe, Eric A. Johnson, William A. Cresko, SNP discovery and genotyping for evolutionary genetics using RAD sequencing. Methods of Molecular Biology. ,vol. 772, pp. 157- 178 ,(2011) , 10.1007/978-1-61779-228-1_9
Robert J. Behnke, Joseph Tomelleri, Trout and Salmon of North America ,(2002)
Fred W. Allendorf, Gary H. Thorgaard, Tetraploidy and the Evolution of Salmonid Fishes Evolutionary Genetics of Fishes. pp. 1- 53 ,(1984) , 10.1007/978-1-4684-4652-4_1
Philippe Brottier, Francis Quétier, William Saurin, Jean Weissenbach, Hugues Roest Crollius, Olivier Jaillon, Alain Bernot, Corinne Dasilva, Laurence Bouneau, Cécile Fischer, Cécile Fizames, Patrick Wincker, Estimate of human gene number provided by genome-wide analysis using Tetraodon nigroviridis DNA sequence Nature Genetics. ,vol. 25, pp. 235- 238 ,(2000) , 10.1038/76118
Marina Govoroun, Florence Le Gac, Yann Guiguen, Generation of a large scale repertoire of Expressed Sequence Tags (ESTs) from normalised rainbow trout cDNA libraries BMC Genomics. ,vol. 7, pp. 196- 196 ,(2006) , 10.1186/1471-2164-7-196
Melinda R. Baerwald, Mariah H. Meek, Molly R. Stephens, Raman P. Nagarajan, Alisha M. Goodbla, Katharine M. H. Tomalty, Gary H. Thorgaard, Bernie May, Krista M. Nichols, Migration‐related phenotypic divergence is associated with epigenetic modifications in rainbow trout Molecular Ecology. ,vol. 25, pp. 1785- 1800 ,(2016) , 10.1111/MEC.13231
Séverine Kirchner, Sadasivam Kaushik, Stéphane Panserat, Low Protein Intake Is Associated with Reduced Hepatic Gluconeogenic Enzyme Expression in Rainbow Trout (Oncorhynchus mykiss) Journal of Nutrition. ,vol. 133, pp. 2561- 2564 ,(2003) , 10.1093/JN/133.8.2561
MICHAEL R. MILLER, JOSEPH P. BRUNELLI, PAUL A. WHEELER, SIXIN LIU, CAIRD E. REXROAD, YNIV PALTI, CHRIS Q. DOE, GARY H. THORGAARD, A conserved haplotype controls parallel adaptation in geographically distant salmonid populations. Molecular Ecology. ,vol. 21, pp. 237- 249 ,(2012) , 10.1111/J.1365-294X.2011.05305.X
Stéphane Panserat, Armelle Perrin, Sadavisam Kaushik, High Dietary Lipids Induce Liver Glucose-6-Phosphatase Expression in Rainbow Trout (Oncorhynchus mykiss) Journal of Nutrition. ,vol. 132, pp. 137- 141 ,(2002) , 10.1093/JN/132.2.137