A conserved haplotype controls parallel adaptation in geographically distant salmonid populations.

作者: MICHAEL R. MILLER , JOSEPH P. BRUNELLI , PAUL A. WHEELER , SIXIN LIU , CAIRD E. REXROAD

DOI: 10.1111/J.1365-294X.2011.05305.X

关键词:

摘要: Salmonid fishes exhibit extensive local adaptations owing to abundant environmental variation and precise natal homing. This adaptation makes conservation restoration of salmonids a challenge. For example, defining unambiguous units is difficult, attempts often fail inadequate adaptive matching translocated populations. A better understanding the genetic architecture in could provide valuable information assist conserving restoring natural populations these important species. Here, we use combination laboratory crosses next-generation sequencing investigate parallel rapid development rate two geographically genetically distant rainbow trout (Oncorhynchus mykiss). Strikingly, find that not only mechanism used but conserved haplotype responsible for this intriguing adaptation. The repeated across geographical areas be general theme have implications restoration.

参考文章(65)
Fred W. Allendorf, Robin S. Waples, Conservation and Genetics of Salmonid Fishes Springer US. pp. 238- 280 ,(1996) , 10.1007/978-1-4757-2504-9_8
Robert J. Behnke, Joseph Tomelleri, Trout and Salmon of North America ,(2002)
Cecilia Castaño Sánchez, Yniv Palti, Caird Rexroad, SNP Analysis with Duplicated Fish Genomes: Differentiation of SNPs, Paralogous Sequence Variants, and Multisite Variants Next generation sequencing and whole genome selection in aquaculture. pp. 133- 150 ,(2010) , 10.1002/9780470958964.CH9
Fred W. Allendorf, Gary H. Thorgaard, Tetraploidy and the Evolution of Salmonid Fishes Evolutionary Genetics of Fishes. pp. 1- 53 ,(1984) , 10.1007/978-1-4684-4652-4_1
Fred W. Allendorf, Fred M. Utter, 8 Population Genetics Fish Physiology. ,vol. 8, pp. 407- 454 ,(1979) , 10.1016/S1546-5098(08)60031-X
J. E. SEEB, C. E. PASCAL, E. D. GRAU, L. W. SEEB, W. D. TEMPLIN, T. HARKINS, S. B. ROBERTS, Transcriptome sequencing and high‐resolution melt analysis advance single nucleotide polymorphism discovery in duplicated salmonids Molecular Ecology Resources. ,vol. 11, pp. 335- 348 ,(2011) , 10.1111/J.1755-0998.2010.02936.X
Paul A. Hohenlohe, Susan Bassham, Paul D. Etter, Nicholas Stiffler, Eric A. Johnson, William A. Cresko, Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags PLoS Genetics. ,vol. 6, pp. e1000862- ,(2010) , 10.1371/JOURNAL.PGEN.1000862
Kathryn R. Elmer, Axel Meyer, Adaptation in the age of ecological genomics: insights from parallelism and convergence. Trends in Ecology and Evolution. ,vol. 26, pp. 298- 306 ,(2011) , 10.1016/J.TREE.2011.02.008
Ruth B. Phillips, Matt R. Morasch, Paul A. Wheeler, Gary H. Thorgaard, Rainbow Trout (Oncorhynchus mykiss) of Idaho and Alaskan Origin (2n = 58) Share a Chromosome Fusion Relative to Trout of California Origin (2n = 60) Copeia. ,vol. 2005, pp. 661- 664 ,(2005) , 10.1643/CG-04-252R1