Co-utilization of glucose and xylose by evolved Thermus thermophilus LC113 strain elucidated by (13)C metabolic flux analysis and whole genome sequencing.

作者: Lauren T. Cordova , Jing Lu , Robert M. Cipolla , Nicholas R. Sandoval , Christopher P. Long

DOI: 10.1016/J.YMBEN.2016.05.001

关键词: BiochemistryMetabolismXylulokinaseCatabolite repressionXylose isomeraseBiologyXyloseThermus thermophilusStrain (chemistry)Metabolic flux analysis

摘要: We evolved Thermus thermophilus to efficiently co-utilize glucose and xylose, the two most abundant sugars in lignocellulosic biomass, at high temperatures without carbon catabolite repression. To generate strain, T. HB8 was first on improve its growth characteristics, followed by evolution xylose. The resulting LC113, characterized studies, whole genome sequencing, (13)C-metabolic flux analysis ((13)C-MFA) with [1,6-(13)C]glucose, [5-(13)C]xylose, [1,6-(13)C]glucose+[5-(13)C]xylose as isotopic tracers. Compared starting strain had an increased rate (~2-fold), biomass yield, tolerance up 90°C, gained ability grow xylose minimal medium. At optimal temperature of 81°C, maximum 0.44 0.46h(-1), respectively. In medium containing co-utilized sugars. (13)C-MFA results provided insights into metabolism LC113 that allows efficient co-utilization Specifically, revealed metabolic fluxes upper part adjust flexibly sugar availability, while lower remain relatively constant. Whole sequence large structural changes can help explain physiology strain: a duplication chromosome region contains many transporters, 5x multiplication pVV8 plasmid isomerase xylulokinase genes, enzymes catabolism. Taken together, complementary strain.

参考文章(43)
Lauren T. Cordova, Maciek R. Antoniewicz, 13C metabolic flux analysis of the extremely thermophilic, fast growing, xylose-utilizing Geobacillus strain LC300 Metabolic Engineering. ,vol. 33, pp. 148- 157 ,(2016) , 10.1016/J.YMBEN.2015.06.004
Quanfeng Liang, Fengyu Zhang, Yikui Li, Xu Zhang, Jiaojiao Li, Peng Yang, Qingsheng Qi, Comparison of individual component deletions in a glucose-specific phosphotransferase system revealed their different applications. Scientific Reports. ,vol. 5, pp. 13200- 13200 ,(2015) , 10.1038/SREP13200
T Beffa, M Blanc, P F Lyon, G Vogt, M Marchiani, J L Fischer, M Aragno, Isolation of Thermus strains from hot composts (60 to 80 degrees C). Applied and Environmental Microbiology. ,vol. 62, pp. 1723- 1727 ,(1996) , 10.1128/AEM.62.5.1723-1727.1996
M Walfridsson, X Bao, M Anderlund, G Lilius, L Bülow, B Hahn-Hägerdal, Ethanolic fermentation of xylose with Saccharomyces cerevisiae harboring the Thermus thermophilus xylA gene, which expresses an active xylose (glucose) isomerase. Applied and Environmental Microbiology. ,vol. 62, pp. 4648- 4651 ,(1996) , 10.1128/AEM.62.12.4648-4651.1996
Shigeyuki Yokoyama, Hiroshi Hirota, Takanori Kigawa, Takashi Yabuki, Mikako Shirouzu, Takaho Terada, Yutaka Ito, Yo Matsuo, Yutaka Kuroda, Yoshifumi Nishimura, Yoshimasa Kyogoku, Kunio Miki, Ryoji Masui, Seiki Kuramitsu, Structural genomics projects in Japan. Nature Structural & Molecular Biology. ,vol. 7, pp. 943- 945 ,(2000) , 10.1038/80712
Maciek R Antoniewicz, Parallel labeling experiments for pathway elucidation and (13)C metabolic flux analysis. Current Opinion in Biotechnology. ,vol. 36, pp. 91- 97 ,(2015) , 10.1016/J.COPBIO.2015.08.014
Lian He, Yi Xiao, Nikodimos Gebreselassie, Fuzhong Zhang, Maciek R. Antoniewicz, Yinjie J. Tang, Lifeng Peng, Central metabolic responses to the overproduction of fatty acids in Escherichia coli based on 13C‐metabolic flux analysis Biotechnology and Bioengineering. ,vol. 111, pp. 575- 585 ,(2014) , 10.1002/BIT.25124
Olga C. Nunes, M. Manuel Donato, Milton S. Da Costa, Isolation and Characterization of Rhodothermus Strains from S. Miguel, Azores Systematic and Applied Microbiology. ,vol. 15, pp. 92- 97 ,(1992) , 10.1016/S0723-2020(11)80144-X
Na-Rae Lee, Meiyappan Lakshmanan, Shilpi Aggarwal, Ji-Won Song, Iftekhar A Karimi, Dong-Yup Lee, Jin-Byung Park, Genome-scale metabolic network reconstruction and in silico flux analysis of the thermophilic bacterium Thermus thermophilus HB27 Microbial Cell Factories. ,vol. 13, pp. 61- 61 ,(2014) , 10.1186/1475-2859-13-61