Extensive Differential Splicing Underlies Phenotypically Plastic Aphid Morphs

作者: Mary E Grantham , Jennifer A Brisson

DOI: 10.1093/MOLBEV/MSY095

关键词:

摘要: Phenotypic plasticity results in a diversity of phenotypes from a single genotype in response to environmental cues. To understand the molecular basis of phenotypic plasticity, studies …

参考文章(80)
Da Wei Huang, Brad T. Sherman, Richard A. Lempicki, Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists Nucleic Acids Research. ,vol. 37, pp. 1- 13 ,(2009) , 10.1093/NAR/GKN923
Liguo Wang, Shengqin Wang, Wei Li, RSeQC: quality control of RNA-seq experiments Bioinformatics. ,vol. 28, pp. 2184- 2185 ,(2012) , 10.1093/BIOINFORMATICS/BTS356
Liana F. Lareau, Steven E. Brenner, Regulation of Splicing Factors by Alternative Splicing and NMD Is Conserved between Kingdoms Yet Evolutionarily Flexible Molecular Biology and Evolution. ,vol. 32, pp. 1072- 1079 ,(2015) , 10.1093/MOLBEV/MSV002
B. P. Lewis, R. E. Green, S. E. Brenner, Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans Proceedings of the National Academy of Sciences of the United States of America. ,vol. 100, pp. 189- 192 ,(2003) , 10.1073/PNAS.0136770100
Swapna R. Purandare, Ryan D. Bickel, Julie Jaquiery, Claude Rispe, Jennifer A. Brisson, Accelerated evolution of morph-biased genes in pea aphids Molecular Biology and Evolution. ,vol. 31, pp. 2073- 2083 ,(2014) , 10.1093/MOLBEV/MSU149
Aron Marchler-Bauer, Myra K. Derbyshire, Noreen R. Gonzales, Shennan Lu, Farideh Chitsaz, Lewis Y. Geer, Renata C. Geer, Jane He, Marc Gwadz, David I. Hurwitz, Christopher J. Lanczycki, Fu Lu, Gabriele H. Marchler, James S. Song, Narmada Thanki, Zhouxi Wang, Roxanne A. Yamashita, Dachuan Zhang, Chanjuan Zheng, Stephen H. Bryant, CDD: NCBI's conserved domain database Nucleic Acids Research. ,vol. 43, pp. 222- 226 ,(2015) , 10.1093/NAR/GKU1221
Eric T. Wang, Rickard Sandberg, Shujun Luo, Irina Khrebtukova, Lu Zhang, Christine Mayr, Stephen F. Kingsmore, Gary P. Schroth, Christopher B. Burge, Alternative Isoform Regulation in Human Tissue Transcriptomes Nature. ,vol. 456, pp. 470- 476 ,(2008) , 10.1038/NATURE07509
Joseph K. Pickrell, Athma A. Pai, Yoav Gilad, Jonathan K. Pritchard, Noisy Splicing Drives mRNA Isoform Diversity in Human Cells PLoS Genetics. ,vol. 6, pp. e1001236- ,(2010) , 10.1371/JOURNAL.PGEN.1001236
Mark F Rogers, Julie Thomas, Anireddy SN Reddy, Asa Ben-Hur, SpliceGrapher: detecting patterns of alternative splicing from RNA-Seq data in the context of gene models and EST data Genome Biology. ,vol. 13, pp. 1- 17 ,(2012) , 10.1186/GB-2012-13-1-R4