Identification of Edc3p as an Enhancer of mRNA Decapping in Saccharomyces cerevisiae

作者: Meenakshi Kshirsagar , Roy Parker

DOI: 10.1534/GENETICS.166.2.729

关键词:

摘要: The major pathway of mRNA decay in yeast initiates with deadenylation, followed by decapping and 5′-3′ exonuclease digestion. An silico approach was used to identify new proteins involved the pathway. One such protein, Edc3p, identified as a conserved protein unknown function having extensive two-hybrid interactions several degradation including Dcp1p, Dcp2p, Dhh1p, Lsm1p, exonuclease, Xrn1p. We show that Edc3p can stimulate both unstable stable mRNAs when enzyme is compromised temperature-sensitive alleles either DCP1 or DCP2 genes. In these cases, deletion EDC3 caused synergistic mRNA-decapping defect at permissive temperatures. edc3 Δ had no effect combined lsm1 Δ, dhh1 pat1 mutations, which appear affect an early step This suggests specifically affects per se . Consistent functional role decapping, GFP-tagged localizes cytoplasmic foci referred P-bodies. These results reaction.

参考文章(51)
Benno Schwikowski, Peter Uetz, Stanley Fields, A NETWORK OF PROTEIN?PROTEIN INTERACTIONS IN YEAST Nature Biotechnology. ,vol. 18, pp. 1257- 1261 ,(2000) , 10.1038/82360
Michelle A. Steiger, Roy Parker, Analyzing mRNA decay in Saccharomyces cerevisiae. Methods in Enzymology. ,vol. 351, pp. 648- 660 ,(2002) , 10.1016/S0076-6879(02)51875-9
G Caponigro, D Muhlrad, R Parker, A small segment of the MAT alpha 1 transcript promotes mRNA decay in Saccharomyces cerevisiae: a stimulatory role for rare codons. Molecular and Cellular Biology. ,vol. 13, pp. 5141- 5148 ,(1993) , 10.1128/MCB.13.9.5141
Travis Dunckley, Roy Parker, Morgan Tucker, Two related proteins, Edc1p and Edc2p, stimulate mRNA decapping in Saccharomyces cerevisiae. Genetics. ,vol. 157, pp. 27- 37 ,(2001) , 10.1093/GENETICS/157.1.27
P Hilleren, R Parker, Mechanisms of mRNA surveillance in eukaryotes. Annual Review of Genetics. ,vol. 33, pp. 229- 260 ,(1999) , 10.1146/ANNUREV.GENET.33.1.229
Mark S. Longtine, Amos Mckenzie III, Douglas J. Demarini, Nirav G. Shah, Achim Wach, Arndt Brachat, Peter Philippsen, John R. Pringle, Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae Yeast. ,vol. 14, pp. 953- 961 ,(1998) , 10.1002/(SICI)1097-0061(199807)14:10<953::AID-YEA293>3.0.CO;2-U
Claire Bonnerot, Ronald Boeck, Bruno Lapeyre, The Two Proteins Pat1p (Mrt1p) and Spb8p Interact In Vivo, Are Required for mRNA Decay, and Are Functionally Linked to Pab1p Molecular and Cellular Biology. ,vol. 20, pp. 5939- 5946 ,(2000) , 10.1128/MCB.20.16.5939-5946.2000
Clare A. Beelman, Audrey Stevens, Giordano Caponigro, Thomas E. LaGrandeur, Lianna Hatfield, David M. Fortner, Roy Parker, An essential component of the decapping enzyme required for normal rates of mRNA turnover. Nature. ,vol. 382, pp. 642- 646 ,(1996) , 10.1038/382642A0
Steven Henikoff, Jorja G. Henikoff, William J. Alford, Shmuel Pietrokovski, Automated construction and graphical presentation of protein blocks from unaligned sequences. Gene. ,vol. 163, ,(1995) , 10.1016/0378-1119(95)00486-P