Concentration Polarization in Translocation of DNA through Nanopores and Nanochannels

作者: Siddhartha Das , Pavel Dubsky , Albert van den Berg , J. C. T. Eijkel

DOI: 10.1103/PHYSREVLETT.108.138101

关键词:

摘要: In this Letter we provide a theory to show that high-field electrokinetic translocation of DNA through nanopores or nanochannels causes large transient variations the ionic concentrations in front and at back due concentration polarization (CP). The CP strong local conductivity variations, which can successfully explain nontrivial current transients distributions observed molecular dynamics simulations nanopore translocations as well dips spikes measured for translocating hairpin DNA. Most importantly, future sequencing by will be based on time-varying electrical conductance, CP, must considered experimental design interpretation-currently these studies are mostly incomplete pore conductance models ignore conductance.

参考文章(19)
Cees Dekker, Solid-state nanopores Nature Nanotechnology. ,vol. 2, pp. 209- 215 ,(2007) , 10.1038/NNANO.2007.27
Binquan Luan, Aleksei Aksimentiev, Control and reversal of the electrophoretic force on DNA in a charged nanopore Journal of Physics: Condensed Matter. ,vol. 22, pp. 454123- 454123 ,(2010) , 10.1088/0953-8984/22/45/454123
Aleksei Aksimentiev, Deciphering ionic current signatures of DNA transport through a nanopore. Nanoscale. ,vol. 2, pp. 468- 483 ,(2010) , 10.1039/B9NR00275H
Jeffrey Comer, Valentin Dimitrov, Qian Zhao, Gregory Timp, Aleksei Aksimentiev, Microscopic mechanics of hairpin DNA translocation through synthetic nanopores Biophysical Journal. ,vol. 96, pp. 593- 608 ,(2009) , 10.1016/J.BPJ.2008.09.023
V. Dimitrov, S. Yemenicioglu, A. Aksimentiev, G. Timp, Q. Zhao, J. Comer, Stretching and unzipping nucleic acid hairpins using a synthetic nanopore Nucleic Acids Research. ,vol. 36, pp. 1532- 1541 ,(2008) , 10.1093/NAR/GKM1017
Georgette B. Salieb-Beugelaar, Juliane Teapal, Jan van Nieuwkasteele, Daniël Wijnperlé, Jonas O. Tegenfeldt, Fred Lisdat, Albert van den Berg, Jan C. T. Eijkel, Field-Dependent DNA Mobility in 20 nm High Nanoslits. Nano Letters. ,vol. 8, pp. 1785- 1790 ,(2008) , 10.1021/NL080300V
H. Strathmann, Membrane separation processes Journal of Membrane Science. ,vol. 9, pp. 121- 189 ,(1981) , 10.1016/S0376-7388(00)85121-2
Sung Jae Kim, Yong-Ak Song, Jongyoon Han, Nanofluidic concentration devices for biomolecules utilizing ion concentration polarization: theory, fabrication, and applications Chemical Society Reviews. ,vol. 39, pp. 912- 922 ,(2010) , 10.1039/B822556G
Aleksij Aksimentiev, Jiunn B. Heng, Gregory Timp, Klaus Schulten, Microscopic Kinetics of DNA Translocation through synthetic nanopores. Biophysical Journal. ,vol. 87, pp. 2086- 2097 ,(2004) , 10.1529/BIOPHYSJ.104.042960
Daniel Branton, David W Deamer, Andre Marziali, Hagan Bayley, Steven A Benner, Thomas Butler, Massimiliano Di Ventra, Slaven Garaj, Andrew Hibbs, Xiaohua Huang, Stevan B Jovanovich, Predrag S Krstic, Stuart Lindsay, Xinsheng Sean Ling, Carlos H Mastrangelo, Amit Meller, John S Oliver, Yuriy V Pershin, J Michael Ramsey, Robert Riehn, Gautam V Soni, Vincent Tabard-Cossa, Meni Wanunu, Matthew Wiggin, Jeffery A Schloss, The Potential and Challenges of Nanopore Sequencing Nature Biotechnology. ,vol. 26, pp. 1146- 1153 ,(2008) , 10.1038/NBT.1495