A novel unexpected use of a graphical representation of DNA: Graphical alignment of DNA sequences
作者： Milan Randić , Jure Zupan , Dražen Vikić-Topić , Dejan Plavšić
DOI: 10.1016/J.CPLETT.2006.09.044
关键词:
摘要: Abstract We outline an unexpected use of a particular graphical representation DNA sequences, the ‘four line’ [M. Randic, M. Vracko, N. Lers, D. Plavsic, Chem. Phys. Lett. 368 (2003) 1] and how it can facilitate solving problem sequence alignment. The approach is exemplified by two shorter sequences.
harvard.edu
elsevier.com
sci-hub.se 参考文章(13)
M. Randić, M. Vračko, A. Nandy, S. C. Basak, On 3-D graphical representation of DNA primary sequences and their numerical characterization. Journal of Chemical Information and Computer Sciences. ,vol. 40, pp. 1235- 1244 ,(2000) , 10.1021/CI000034Q
EUGENE HAMORI, Novel DNA sequence representations Nature. ,vol. 314, pp. 585- 585 ,(1985) , 10.1038/314585A0
Milan Randić, Nella Lerš, Dejan Plavšić, Subhash C. Basak, Alexandru T. Balaban, Four-color map representation of DNA or RNA sequences and their numerical characterization Chemical Physics Letters. ,vol. 407, pp. 205- 208 ,(2005) , 10.1016/J.CPLETT.2005.03.086
M. A. GATES, Simpler DNA sequence representations. Nature. ,vol. 316, pp. 219- 219 ,(1985) , 10.1038/316219A0
Xiaofeng Guo, Milan Randic, Subhash C. Basak, A novel 2-D graphical representation of DNA sequences of low degeneracy Chemical Physics Letters. ,vol. 350, pp. 106- 112 ,(2001) , 10.1016/S0009-2614(01)01246-5
Michael A. Gates, A simple way to look at DNA. Journal of Theoretical Biology. ,vol. 119, pp. 319- 328 ,(1986) , 10.1016/S0022-5193(86)80144-8
Yachun Liu, Xiaofeng Guo, Jin Xu, Linqiang Pan, Shiying Wang, Some Notes on 2-D Graphical Representation of DNA Sequence Journal of Chemical Information and Computer Sciences. ,vol. 42, pp. 529- 533 ,(2002) , 10.1021/CI010017G
Milan Randić, Marjan Vračko, Nella Lerš, Dejan Plavšić, Novel 2-D graphical representation of DNA sequences and their numerical characterization Chemical Physics Letters. ,vol. 368, pp. 1- 6 ,(2003) , 10.1016/S0009-2614(02)01784-0
Milan Randić, Marjan Vračko, Nella Lerš, Dejan Plavšić, Analysis of similarity/dissimilarity of DNA sequences based on novel 2-D graphical representation Chemical Physics Letters. ,vol. 371, pp. 202- 207 ,(2003) , 10.1016/S0009-2614(03)00244-6
Milan Randić, Graphical representations of DNA as 2-D map Chemical Physics Letters. ,vol. 386, pp. 468- 471 ,(2004) , 10.1016/J.CPLETT.2004.01.088