BioMart – biological queries made easy

作者: Damian Smedley , Syed Haider , Benoit Ballester , Richard Holland , Darin London

DOI: 10.1186/1471-2164-10-22

关键词:

摘要: Biologists need to perform complex queries, often across a variety of databases. Typically, each data resource provides an advanced query interface, which must be learnt by the biologist before they can begin them. Frequently, more than one source is required and for high-throughput analysis, cutting pasting results between websites certainly very time consuming. Therefore, many groups rely on local bioinformatics support process queries accessing resource's programmatic interfaces if exist. This not efficient solution in terms cost time. Instead, it would better only had learn generic interface. BioMart such solution.

参考文章(18)
Rex L Chisholm, Pascale Gaudet, Eric M Just, Karen E Pilcher, Petra Fey, Sohel N Merchant, Warren A Kibbe, dictyBase, the model organism database for Dictyostelium discoideum Nucleic Acids Research. ,vol. 34, pp. 423- 427 ,(2006) , 10.1093/NAR/GKJ090
Peter Rice, Ian Longden, Alan Bleasby, EMBOSS: The European Molecular Biology Open Software Suite Trends in Genetics. ,vol. 16, pp. 276- 277 ,(2000) , 10.1016/S0168-9525(00)02024-2
Mark D Wilkinson, Matthew Links, BioMOBY: An open source biological web services proposal Briefings in Bioinformatics. ,vol. 3, pp. 331- 341 ,(2002) , 10.1093/BIB/3.4.331
Giorgia Beffagna, Gianluca Occhi, Andrea Nava, Libero Vitiello, Andrea Ditadi, Cristina Basso, Barbara Bauce, Gianni Carraro, Gaetano Thiene, Jeffrey A Towbin, Gian Antonio Danieli, Alessandra Rampazzo, Regulatory mutations in transforming growth factor-β3 gene cause arrhythmogenic right ventricular cardiomyopathy type 1 Cardiovascular Research. ,vol. 65, pp. 366- 373 ,(2005) , 10.1016/J.CARDIORES.2004.10.005
Claude Chelala, Stephan A Hahn, Hannah J Whiteman, Sayka Barry, Deepak Hariharan, Tomasz P Radon, Nicholas R Lemoine, Tatjana Crnogorac-Jurcevic, Pancreatic Expression database: a generic model for the organization, integration and mining of complex cancer datasets BMC Genomics. ,vol. 8, pp. 439- 439 ,(2007) , 10.1186/1471-2164-8-439
Simon N Twigger, Mary Shimoyama, Susan Bromberg, Anne E Kwitek, Howard J Jacob, RGD team, None, The Rat Genome Database, update 2007—Easing the path from disease to data and back again Nucleic Acids Research. ,vol. 35, pp. 658- 662 ,(2007) , 10.1093/NAR/GKL988
P. Jones, R. G. Cote, S. Y. Cho, S. Klie, L. Martens, A. F. Quinn, D. Thorneycroft, H. Hermjakob, PRIDE: new developments and new datasets. Nucleic Acids Research. ,vol. 36, pp. 878- 883 ,(2007) , 10.1093/NAR/GKM1021
Alessandra Rampazzo, Andrea Nava, Gian A. Danieli, Gianfranco Buja, Luciano Daliento, Giuseppe Fasoli, Roldano Scognamiglio, Domenico Corrado, Gaetano Thlene, The gene for arrhythmogenic right ventricular cardiomyopathy maps to chromosome 14q23-q24. Human Molecular Genetics. ,vol. 3, pp. 959- 962 ,(1994) , 10.1093/HMG/3.6.959
Imre Vastrik, Peter D'Eustachio, Esther Schmidt, Geeta Joshi-Tope, Gopal Gopinath, David Croft, Bernard de Bono, Marc Gillespie, Bijay Jassal, Suzanna Lewis, Lisa Matthews, Guanming Wu, Ewan Birney, Lincoln Stein, Reactome: a knowledge base of biologic pathways and processes Genome Biology. ,vol. 8, pp. 1- 13 ,(2007) , 10.1186/GB-2007-8-3-R39