Reliable Phylogenetic Trees Building: A New Web Interface for FIGENIX

作者: Julien Paganini , Philippe Gouret

DOI: 10.4137/EBO.S9179

关键词:

摘要: The community needed a reliable and user friendly tool to quickly produce robust phylogenetic trees which are crucial in evolutionary studies genomes’ functional annotation. FIGENIX is software dedicated this was published 2005. Several laboratories around the world use it their research, but difficult for non-expert users, thus we developed new graphical interface benefit of all biologists.

参考文章(10)
Philippe Gouret, Julien Paganini, Jacques Dainat, Dorra Louati, Elodie Darbo, Pierre Pontarotti, Anthony Levasseur, Integration of Evolutionary Biology Concepts for Functional Annotation and Automation of Complex Research in Evolution: The Multi-Agent Software System DAGOBAH Springer, Berlin, Heidelberg. pp. 71- 87 ,(2011) , 10.1007/978-3-642-20763-1_5
Robin A Ohm, Jan F de Jong, Luis G Lugones, Andrea Aerts, Erika Kothe, Jason E Stajich, Ronald P de Vries, Eric Record, Anthony Levasseur, Scott E Baker, Kirk A Bartholomew, Pedro M Coutinho, Susann Erdmann, Thomas J Fowler, Allen C Gathman, Vincent Lombard, Bernard Henrissat, Nicole Knabe, Ursula Kües, Walt W Lilly, Erika Lindquist, Susan Lucas, Jon K Magnuson, François Piumi, Marjatta Raudaskoski, Asaf Salamov, Jeremy Schmutz, Francis W M R Schwarze, Patricia A vanKuyk, J Stephen Horton, Igor V Grigoriev, Han A B Wösten, Genome sequence of the model mushroom Schizophyllum commune Nature Biotechnology. ,vol. 28, pp. 957- 963 ,(2010) , 10.1038/NBT.1643
Julien Bobe, Yann Guiguen, Alexis Fostier, Diversity and biological significance of sex hormone-binding globulin in fish, an evolutionary perspective. Molecular and Cellular Endocrinology. ,vol. 316, pp. 66- 78 ,(2010) , 10.1016/J.MCE.2009.09.017
A. Dereeper, V. Guignon, G. Blanc, S. Audic, S. Buffet, F. Chevenet, J.-F. Dufayard, S. Guindon, V. Lefort, M. Lescot, J.-M. Claverie, O. Gascuel, Phylogeny.fr: robust phylogenetic analysis for the non-specialist Nucleic Acids Research. ,vol. 36, pp. 465- 469 ,(2008) , 10.1093/NAR/GKN180
Pierre-Yves Rescan, Cecile Ralliere, A Sox5 gene is expressed in the myogenic lineage during trout embryonic development. The International Journal of Developmental Biology. ,vol. 54, pp. 913- 918 ,(2010) , 10.1387/IJDB.092893PR
Rob te Biesebeke, Anthony Levasseur, Amandine Boussier, Eric Record, Cees A.M.J.J. van den Hondel, Peter J. Punt, Phylogeny of fungal hemoglobins and expression analysis of the Aspergillus oryzae flavohemoglobin gene fhbA during hyphal growth Fungal Biology. ,vol. 114, pp. 135- 143 ,(2010) , 10.1016/J.MYCRES.2009.08.007
Terry H. Shen, Peter Tarczy-Hornoch, Landon T. Detwiler, Eithon Cadag, Christopher S. Carlson, Evaluation of probabilistic and logical inference for a SNP annotation system Journal of Biomedical Informatics. ,vol. 43, pp. 407- 418 ,(2010) , 10.1016/J.JBI.2009.12.002
Philippe Gouret, Julie D Thompson, Pierre Pontarotti, PhyloPattern: regular expressions to identify complex patterns in phylogenetic trees BMC Bioinformatics. ,vol. 10, pp. 298- 298 ,(2009) , 10.1186/1471-2105-10-298
Vérane Vitiello, Nathalie Balandraud, André Gilles, Pierre Pontarotti, Etienne Danchin, None, FIGENIX: Intelligent automation of genomic annotation: expertise integration in a new software platform BMC Bioinformatics. ,vol. 6, pp. 198- 198 ,(2005) , 10.1186/1471-2105-6-198