Dynamics and Reversibility of the DNA Methylation Landscape of Grapevine Plants (Vitis vinifera) Stressed by In Vitro Cultivation and Thermotherapy

作者: Miroslav Baránek , Jana Čechová , Jana Raddová , Věra Holleinová , Eva Ondrušíková

DOI: 10.1371/JOURNAL.PONE.0126638

关键词:

摘要: There is relatively little information concerning long-term alterations in DNA methylation following exposure of plants to environmental stress. As known about the ratio non-heritable changes and mitotically-inherited changes, dynamics reversibility states were investigated grapevine (Vitis vinifera) stressed by vitro cultivation. It was observed that significant part induced epigenetic could be repeatedly established particular planting stress conditions. However, once conditions discontinued, many gradually reverted returned similar those maternal plants. In fact, period one three years after cultivation it difficult distinguish somaclones Forty percent disappeared within a year subsequent termination ending these probably reflect caused transient reversible stress-responsive acclimation mechanisms. sixty diversity remained 1 represents epimutations. Sequencing regions remaining variable between regenerant revealed 29.3% sequences corresponded non-coding genome. Eight (19.5%) previously identified genes ones (51.2%) annotated as "hypothetical proteins" based on their similarity described other species, including likely undergo (V. vinifera gypsy-type retrotransposon Gret1, auxin-responsive transcription factor 6-like, SAM-dependent carboxyl methyltransferase).

参考文章(60)
I. Gribaudo, F. Mannini, A. Lisa, D. Cuozzo, Phenotypical modifications of micropropagated grapevines International symposium on methods and markers for quality assurance in micropropagation, Cork, Irish Republic, 24-27 August, 1999.. pp. 231- 236 ,(2000) , 10.17660/ACTAHORTIC.2000.530.27
Maria Rosaria Matarazzo, Francesca Lembo, Tiziana Angrisano, Esteban Ballestar, Marcella Ferraro, Raffaela Pero, Maria Luigia De Bonis, Carmelo Bruno Bruni, Manel Esteller, Maurizio D'Esposito, Lorenzo Chiariotti, In vivo analysis of DNA methylation patterns recognized by specific proteins: coupling CHIP and bisulfite analysis. BioTechniques. ,vol. 37, pp. 666- 673 ,(2004) , 10.2144/04374DD02
A. Falk, C. F. Popescu, K. Glimelius, Application of AFLPs to characterize somaclonal variation in anther-derived grapevines Vitis: Journal of Grapevine Research. ,vol. 41, pp. 177- 182 ,(2002) , 10.5073/VITIS.2002.41.177-182
D. S. Brar, S. M. Jain, Somaclonal Variation: Mechanism and Applications in Crop Improvement Somaclonal Variation and Induced Mutations in Crop Improvement. pp. 15- 37 ,(1998) , 10.1007/978-94-015-9125-6_2
Alain Rival, Estelle Jaligot, Epigenetics and Plant Breeding John Wiley & Sons, Inc.. pp. 49- 177 ,(2008) , 10.1002/9780470380130.CH2
Kenneth P. Nephew, Yu Wei Leu, Farahnaz Rahmatpanah, Pearlly S. Yan, Susan H. Wei, Huidong Shi, Tim Hui Ming Huang, Joseph C. Liu, Triple Analysis of the Cancer Epigenome An Integrated Microarray System for Assessing Gene Expression, DNA Methylation, and Histone Acetylation Cancer Research. ,vol. 63, pp. 2164- 2171 ,(2003)
Hui Li, Meijuan Geng, Qian Liu, Chuan Jin, Qingli Zhang, Chengbin Chen, Wenqin Song, Chunguo Wang, Characteristics of cytosine methylation status and methyltransferase genes in the early development stage of cauliflower (Brassica oleracea L. var. botrytis) Plant Cell, Tissue and Organ Culture (PCTOC). ,vol. 117, pp. 187- 199 ,(2014) , 10.1007/S11240-014-0432-5
Jennifer L Martin, Fiona M McMillan, SAM (dependent) I AM: the S-adenosylmethionine-dependent methyltransferase fold. Current Opinion in Structural Biology. ,vol. 12, pp. 783- 793 ,(2002) , 10.1016/S0959-440X(02)00391-3
Hidetaka Ito, Hervé Gaubert, Etienne Bucher, Marie Mirouze, Isabelle Vaillant, Jerzy Paszkowski, An siRNA pathway prevents transgenerational retrotransposition in plants subjected to stress Nature. ,vol. 472, pp. 115- 119 ,(2011) , 10.1038/NATURE09861
M. Frommer, L. E. McDonald, D. S. Millar, C. M. Collis, F. Watt, G. W. Grigg, P. L. Molloy, C. L. Paul, A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 89, pp. 1827- 1831 ,(1992) , 10.1073/PNAS.89.5.1827