The Dynamics of SecM-Induced Translational Stalling

作者: Albert Tsai , Guy Kornberg , Magnus Johansson , Jin Chen , Joseph D Puglisi

DOI: 10.1016/J.CELREP.2014.04.033

关键词:

摘要: SecM is an E. coli secretion monitor capable of stalling translation on the prokaryotic ribosome without cofactors. Biochemical and structural studies have demonstrated that nascent chain interacts with 50S subunit exit tunnel to inhibit peptide bond formation. However, timescales pathways of stalling mRNA remain undefined. To provide a dynamic mechanism for stalling, we directly tracked dynamics elongation ribosomes translating stall sequence (FSTPVWISQAQGIRAGP) using single-molecule fluorescence techniques. Within 1 min, three peptide-ribosome interactions work cooperatively over last five codons sequence, leading severely impaired rates beginning from terminal proline lasting four codons. Our results suggest tightly linked underscore roles play in controlling fundamental steps translation.

参考文章(42)
M G Schmidt, E E Rollo, J Grodberg, D B Oliver, Nucleotide sequence of the secA gene and secA(Ts) mutations preventing protein export in Escherichia coli. Journal of Bacteriology. ,vol. 170, pp. 3404- 3414 ,(1988) , 10.1128/JB.170.8.3404-3414.1988
Magnus Johansson, Jin Chen, Albert Tsai, Guy Kornberg, Joseph D Puglisi, None, Sequence-dependent elongation dynamics on macrolide-bound ribosomes. Cell Reports. ,vol. 7, pp. 1534- 1546 ,(2014) , 10.1016/J.CELREP.2014.04.034
Michael S Evans, Krastyu G Ugrinov, Marc-André Frese, Patricia L Clark, Homogeneous stalled ribosome nascent chain complexes produced in vivo or in vitro Nature Methods. ,vol. 2, pp. 757- 762 ,(2005) , 10.1038/NMETH790
Hitoshi Nakatogawa, Koreaki Ito, Secretion Monitor, SecM, Undergoes Self-Translation Arrest in the Cytosol Molecular Cell. ,vol. 7, pp. 185- 192 ,(2001) , 10.1016/S1097-2765(01)00166-6
Albert Tsai, Alexey Petrov, R. Andrew Marshall, Jonas Korlach, Sotaro Uemura, Joseph D. Puglisi, Heterogeneous pathways and timing of factor departure during translation initiation Nature. ,vol. 487, pp. 390- 393 ,(2012) , 10.1038/NATURE11172
J. Chen, R. V. Dalal, A. N. Petrov, A. Tsai, S. E. O'Leary, K. Chapin, J. Cheng, M. Ewan, P.-L. Hsiung, P. Lundquist, S. W. Turner, D. R. Hsu, J. D. Puglisi, High-throughput platform for real-time monitoring of biological processes by multicolor single-molecule fluorescence Proceedings of the National Academy of Sciences of the United States of America. ,vol. 111, pp. 664- 669 ,(2014) , 10.1073/PNAS.1315735111
R. Andrew Marshall, Magdalena Dorywalska, Joseph D. Puglisi, Irreversible chemical steps control intersubunit dynamics during translation. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 105, pp. 15364- 15369 ,(2008) , 10.1073/PNAS.0805299105
B. Seidelt, C. A. Innis, D. N. Wilson, M. Gartmann, J.-P. Armache, E. Villa, L. G. Trabuco, T. Becker, T. Mielke, K. Schulten, T. A. Steitz, R. Beckmann, Structural insight into nascent polypeptide chain-mediated translational stalling. Science. ,vol. 326, pp. 1412- 1415 ,(2009) , 10.1126/SCIENCE.1177662
Michael J Levene, Jonas Korlach, Stephen W Turner, Mathieu Foquet, Harold G Craighead, Watt W Webb, Zero-Mode Waveguides for Single-Molecule Analysis at High Concentrations Science. ,vol. 299, pp. 682- 686 ,(2003) , 10.1126/SCIENCE.1079700