Mechanical force releases nascent chain–mediated ribosome arrest in vitro and in vivo

作者: D. H. Goldman , C. M. Kaiser , A. Milin , M. Righini , I. Tinoco

DOI: 10.1126/SCIENCE.1261909

关键词:

摘要: Protein synthesis rates can affect gene expression and the folding activity of translation product. Interactions between nascent polypeptide ribosome exit tunnel represent one mode regulating rates. The SecM protein arrests its own translation, release arrest at translocon has been proposed to occur by mechanical force. Using optical tweezers, we demonstrate that SecM-stalled ribosomes indeed be rescued force alone needed stalling generated in vivo a chain near exit. We formulate kinetic model describing how regulate during folding, tuning structure acquisition polypeptide.

参考文章(28)
Brian Kuhlman, Gautam Dantas, Gregory C. Ireton, Gabriele Varani, Barry L. Stoddard, David Baker, Design of a Novel Globular Protein Fold with Atomic-Level Accuracy Science. ,vol. 302, pp. 1364- 1368 ,(2003) , 10.1126/SCIENCE.1089427
Susanne Ude, Jürgen Lassak, Agata L. Starosta, Tobias Kraxenberger, Daniel N. Wilson, Kirsten Jung, Translation Elongation Factor EF-P Alleviates Ribosome Stalling at Polyproline Stretches Science. ,vol. 339, pp. 82- 85 ,(2013) , 10.1126/SCIENCE.1228985
J. P. Junker, F. Ziegler, M. Rief, Ligand-dependent equilibrium fluctuations of single calmodulin molecules. Science. ,vol. 323, pp. 633- 637 ,(2009) , 10.1126/SCIENCE.1166191
D. Nathans, PUROMYCIN INHIBITION OF PROTEIN SYNTHESIS: INCORPORATION OF PUROMYCIN INTO PEPTIDE CHAINS. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 51, pp. 585- 592 ,(1964) , 10.1073/PNAS.51.4.585
Daniel A. Nissley, Edward P. O’Brien, Timing is everything: unifying codon translation rates and nascent proteome behavior. Journal of the American Chemical Society. ,vol. 136, pp. 17892- 17898 ,(2014) , 10.1021/JA510082J
O. K. Dudko, G. Hummer, A. Szabo, Theory, analysis, and interpretation of single-molecule force spectroscopy experiments Proceedings of the National Academy of Sciences of the United States of America. ,vol. 105, pp. 15755- 15760 ,(2008) , 10.1073/PNAS.0806085105
Hiroki Muto, Hitoshi Nakatogawa, Koreaki Ito, Genetically Encoded but Nonpolypeptide Prolyl-tRNA Functions in the A Site for SecM-Mediated Ribosomal Stall Molecular Cell. ,vol. 22, pp. 545- 552 ,(2006) , 10.1016/J.MOLCEL.2006.03.033
Albert Tsai, Guy Kornberg, Magnus Johansson, Jin Chen, Joseph D Puglisi, None, The Dynamics of SecM-Induced Translational Stalling Cell Reports. ,vol. 7, pp. 1521- 1533 ,(2014) , 10.1016/J.CELREP.2014.04.033
N.R. Voss, M. Gerstein, T.A. Steitz, P.B. Moore, The geometry of the ribosomal polypeptide exit tunnel. Journal of Molecular Biology. ,vol. 360, pp. 893- 906 ,(2006) , 10.1016/J.JMB.2006.05.023
James Gumbart, Eduard Schreiner, Daniel N. Wilson, Roland Beckmann, Klaus Schulten, Mechanisms of SecM-mediated stalling in the ribosome. Biophysical Journal. ,vol. 103, pp. 331- 341 ,(2012) , 10.1016/J.BPJ.2012.06.005