FRACTAL CANTOR PATTERNS IN THE SEQUENCE STRUCTURE OF DNA
作者： A. PROVATA , Y. ALMIRANTIS
DOI: 10.1142/S0218348X00000044
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摘要: The coding parts of DNA sequences are regarded as clusters connected sites a random Cantor-like set, while the non-coding empty regions same set. Under this representation, we find that higher eucaryotes mapped on Cantor sets with fractal dimension around 0.85, lower organisms 1. This result indicates coding/non-coding partition in is homogeneous-like, fractal. agrees power law distribution observed eucaryotes.
sci-hub.se 参考文章(11)
Y. Almirantis, A. Provata, Long- and Short-Range Correlations in Genome Organization Journal of Statistical Physics. ,vol. 97, pp. 233- 262 ,(1999) , 10.1023/A:1004671119400
A. Arneodo, E. Bacry, P. V. Graves, J. F. Muzy, Characterizing long-range correlations in DNA sequences from wavelet analysis. Physical Review Letters. ,vol. 74, pp. 3293- 3296 ,(1995) , 10.1103/PHYSREVLETT.74.3293
R. N. Mantegna, S. V. Buldyrev, A. L. Goldberger, S. Havlin, C. K. Peng, M. Simons, H. E. Stanley, Linguistic features of noncoding DNA sequences. Physical Review Letters. ,vol. 73, pp. 3169- 3172 ,(1994) , 10.1103/PHYSREVLETT.73.3169
Hanspeter Herzel, Ivo Große, MEASURING CORRELATIONS IN SYMBOL SEQUENCES Physica A-statistical Mechanics and Its Applications. ,vol. 216, pp. 518- 542 ,(1995) , 10.1016/0378-4371(95)00104-F
S. Brenner, G. Elgar, R. Sanford, A. Macrae, B. Venkatesh, S. Aparicio, Characterization of the pufferfish ( Fugu ) genome as a compact model vertebrate genome Nature. ,vol. 366, pp. 265- 268 ,(1993) , 10.1038/366265A0
O. Popov, D.M. Segal, E.N. Trifonov, Linguistic complexity of protein sequences as compared to texts of human languages BioSystems. ,vol. 38, pp. 65- 74 ,(1996) , 10.1016/0303-2647(95)01568-X
Anastasios A. Tsonis, James B. Elsner, Panagiotis A. Tsonis, Periodicity in DNA coding sequences: Implications in gene evolution Journal of Theoretical Biology. ,vol. 151, pp. 323- 331 ,(1991) , 10.1016/S0022-5193(05)80381-9
A. Provata, Y. Almirantis, Scaling properties of coding and non-coding DNA sequences Physica A-statistical Mechanics and Its Applications. ,vol. 247, pp. 482- 496 ,(1997) , 10.1016/S0378-4371(97)00424-X
A. Provata, RANDOM AGGREGATION MODELS FOR THE FORMATION AND EVOLUTION OF CODING AND NON-CODING DNA Physica A-statistical Mechanics and Its Applications. ,vol. 264, pp. 570- 580 ,(1999) , 10.1016/S0378-4371(98)00546-9
Nikolay V. Dokholyan, Sergey V. Buldyrev, Shlomo Havlin, H. Eugene Stanley, Distribution of Base Pair Repeats in Coding and Noncoding DNA Sequences Physical Review Letters. ,vol. 79, pp. 5182- 5185 ,(1997) , 10.1103/PHYSREVLETT.79.5182