ArrayExpress update—from an archive of functional genomics experiments to the atlas of gene expression
作者： H. Parkinson , M. Kapushesky , N. Kolesnikov , G. Rustici , M. Shojatalab
DOI: 10.1093/NAR/GKN889
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摘要: ArrayExpress http://www.ebi.ac.uk/arrayexpress consists of three components: the Repository—a public archive functional genomics experiments and supporting data, Warehouse—a database gene expression profiles other bio-measurements Atlas—a new summary metaanalytical tool ranked across multiple different biological conditions. The Repository contains data from over 6000 comprising approximately 200000 assays, doubles in size every 15 months. majority are array based, but types included, most recently— ultra high-throughput sequencing transcriptomics epigenetic data. Warehouse Atlas allow users to query for differentially expressed genes by names properties, experimental conditions sample or a combination both. In this update, we describe developments last two years.
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