Recognition of DNA damage by the Rad4 nucleotide excision repair protein

作者: Jung-Hyun Min , Nikola P. Pavletich

DOI: 10.1038/NATURE06155

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摘要: Mutations in the nucleotide excision repair (NER) pathway can cause xeroderma pigmentosum skin cancer predisposition syndrome. NER lesions are limited to one DNA strand, but otherwise they chemically and structurally diverse, being caused by a wide variety of genotoxic chemicals ultraviolet radiation. The C (XPC) protein has central role initiating global-genome recognizing lesion recruiting downstream factors. Here we present crystal structure yeast XPC orthologue Rad4 bound containing cyclobutane pyrimidine dimer (CPD) lesion. shows that inserts β-hairpin through duplex, causing two damaged base pairs flip out double helix. expelled nucleotides undamaged strand recognized Rad4, whereas CPD-linked become disordered. These findings indicate Rad4/XPC thermodynamically destabilize Watson–Crick helix manner facilitates flipping-out pairs. A lasing effect with single artificial atom (a Josephson-junction charge qubit) is embedded superconducting resonator demonstrated, making use property such atoms strongly controllably coupled modes. device essentially different from existing lasers masers; same excited current injection produces many photons.

参考文章(50)
W. L. Delano, The PyMOL Molecular Graphics System DeLano Scientific. ,(2002)
C. Masutani, K. Sugasawa, J. Yanagisawa, T. Sonoyama, M. Ui, T. Enomoto, K. Takio, K. Tanaka, P.J. van der Spek, D. Bootsma, Purification and cloning of a nucleotide excision repair complex involving the xeroderma pigmentosum group C protein and a human homologue of yeast RAD23. The EMBO Journal. ,vol. 13, pp. 1831- 1843 ,(1994) , 10.1002/J.1460-2075.1994.TB06452.X
Zbyszek Otwinowski, Wladek Minor, Processing of X-ray diffraction data collected in oscillation mode Methods in Enzymology. ,vol. 276, pp. 307- 326 ,(1997) , 10.1016/S0076-6879(97)76066-X
James E. Cleaver, Cancer in xeroderma pigmentosum and related disorders of DNA repair. Nature Reviews Cancer. ,vol. 5, pp. 564- 573 ,(2005) , 10.1038/NRC1652
Nicholas E. Geacintov, Tonko Buterin, Heiko Kroth, Natalia Luneva, Shantu Amin, Hanspeter Naegeli, Albrecht Seidel, Martin T. Hess, Unrepaired fjord region polycyclic aromatic hydrocarbon-DNA adducts in ras codon 61 mutational hot spots. Cancer Research. ,vol. 60, pp. 1849- 1856 ,(2000) , 10.5167/UZH-35868
Nicholas E. Geacintov, Suse Broyde, Tonko Buterin, Hanspeter Naegeli, Min Wu, Shixiang Yan, Dinshaw J. Patel, Thermodynamic and structural factors in the removal of bulky DNA adducts by the nucleotide excision repair machinery. Biopolymers. ,vol. 65, pp. 202- 210 ,(2002) , 10.1002/BIP.10239
Garry W Buchko, Chang-Shung Tung, Kathleen McAteer, Nancy G Isern, Leonard D Spicer, Michael A Kennedy, DNA–XPA interactions: a 31P NMR and molecular modeling study of dCCAATAACC association with the minimal DNA-binding domain (M98–F219) of the nucleotide excision repair protein XPA Nucleic Acids Research. ,vol. 29, pp. 2635- 2643 ,(2001) , 10.1093/NAR/29.12.2635
Yi-Gui Gao, Howard Robinson, Ruslan Sanishvili, Andrzej Joachimiak, Andrew H.-J. Wang, Structure and recognition of sheared tandem G x A base pairs associated with human centromere DNA sequence at atomic resolution. Biochemistry. ,vol. 38, pp. 16452- 16460 ,(1999) , 10.1021/BI9914614
Ludovic C. J. Gillet, Orlando D. Schärer, Molecular mechanisms of mammalian global genome nucleotide excision repair. Chemical Reviews. ,vol. 106, pp. 253- 276 ,(2006) , 10.1021/CR040483F