Competitive amplification of differentially melting amplicons (CADMA) enables sensitive and direct detection of all mutation types by high‐resolution melting analysis

作者: Lasse S. Kristensen , Gitte B. Andersen , Henrik Hager , Lise Lotte Hansen

DOI: 10.1002/HUMU.21598

关键词:

摘要: Sensitive and specific mutation detection is of particular importance in cancer diagnostics, prognostics, individualized patient treatment. However, the majority molecular methodologies that have been developed with aim increasing sensitivity testing drawbacks terms specificity, convenience, or costs. Here, we established a new method, Competitive Amplification Differentially Melting Amplicons (CADMA), which allows very sensitive all types. The principle method to amplify wild-type mutated sequences simultaneously using three-primer system. A mutation-specific primer designed introduce melting temperature decreasing mutations resulting amplicon, while second overlapping both sequences. When combined third common becomes possible, when high-resolution (HRM) as platform. introduction amplicon also for further enrichment by fast coamplification at lower denaturation PCR (COLD-PCR). For proof-of-concept, CADMA assays clinically relevant BRAF, EGFR, KRAS, PIK3CA mutations, are to, between 0.025% 0.25%, alleles background. In conclusion, enables highly HRM analysis.

参考文章(28)
Harith Rajagopalan, Alberto Bardelli, Christoph Lengauer, Kenneth W. Kinzler, Bert Vogelstein, Victor E. Velculescu, Tumorigenesis: RAF/RAS oncogenes and mismatch-repair status. Nature. ,vol. 418, pp. 934- 934 ,(2002) , 10.1038/418934A
A Lièvre, H Blons, P Laurent-Puig, Oncogenic mutations as predictive factors in colorectal cancer Oncogene. ,vol. 29, pp. 3033- 3043 ,(2010) , 10.1038/ONC.2010.89
Lasse S. Kristensen, Iben L. Daugaard, Mariann Christensen, Stephen Hamilton-Dutoit, Henrik Hager, Lise Lotte Hansen, Increased sensitivity of KRAS mutation detection by high‐resolution melting analysis of COLD‐PCR products Human Mutation. ,vol. 31, pp. 1366- 1373 ,(2010) , 10.1002/HUMU.21358
S Kwok, S Y Chang, J J Sninsky, A Wang, A guide to the design and use of mismatched and degenerate primers. Genome Research. ,vol. 3, pp. S39- S47 ,(1994) , 10.1101/GR.3.4.S39
Yanning Cai, Yanpeng Yuan, Qingling Lin, Piu Chan, Allele-specific extension allows base-pair neutral homozygotes to be discriminated by high-resolution melting of small amplicons. Analytical Biochemistry. ,vol. 406, pp. 29- 33 ,(2010) , 10.1016/J.AB.2010.06.043
Takashi Kobunai, Toshiaki Watanabe, Yoko Yamamoto, Kiyoshi Eshima, The frequency of KRAS mutation detection in human colon carcinoma is influenced by the sensitivity of assay methodology: A comparison between direct sequencing and real-time PCR Biochemical and Biophysical Research Communications. ,vol. 395, pp. 158- 162 ,(2010) , 10.1016/J.BBRC.2010.03.167
Carl T. Wittwer, HIGH-RESOLUTION DNA MELTING ANALYSIS: ADVANCEMENTS AND LIMITATIONS Human Mutation. ,vol. 30, pp. 857- 859 ,(2009) , 10.1002/HUMU.20951
Thomas J. Lynch, Daphne W. Bell, Raffaella Sordella, Sarada Gurubhagavatula, Ross A. Okimoto, Brian W. Brannigan, Patricia L. Harris, Sara M. Haserlat, Jeffrey G. Supko, Frank G. Haluska, David N. Louis, David C. Christiani, Jeff Settleman, Daniel A. Haber, Activating mutations in the epidermal growth factor receptor underlying responsiveness of non-small-cell lung cancer to gefitinib The New England Journal of Medicine. ,vol. 350, pp. 2129- 2139 ,(2004) , 10.1056/NEJMOA040938
Alois H. Lang, Heinz Drexel, Simone Geller-Rhomberg, Nicole Stark, Thomas Winder, Kathrin Geiger, Axel Muendlein, Optimized Allele-Specific Real-Time PCR Assays for the Detection of Common Mutations in KRAS and BRAF The Journal of Molecular Diagnostics. ,vol. 13, pp. 23- 28 ,(2011) , 10.1016/J.JMOLDX.2010.11.007