A rapid HLA-DRB1*04 subtyping method using PCR and DNA heteroduplex generators.

作者: N. A. P. Wood , J. Evans , J. L. Bidwell , J. L. K. Wee , A. A. Oei

DOI: 10.1111/J.1399-0039.1996.TB02555.X

关键词:

摘要: We describe here a rapid polymerase chain reaction (PCR)-based method for the identification of HLA-DRB1*0401-*0412 alleles. The is based on generation specific DNA heteroduplex patterns between PCR products derived from selective group-specific amplification various DRB1*04 alleles and two synthetic generator (DHG) molecules following non-denaturing polyacrylamide minigel electrophoresis. One DHG was designed to detect DRB1*0401, *0405, *0407, *0408, *0409 alleles, whilst other DRB1*0402, *0403, *0404, *0406, *0410, *0411, *0412 Characteristic were obtained all tested both in homozygous heterozygous situations. Both PCR-SSP (sequence-specific primer) typing performed 41 positive DNAs Singaporean Chinese blood donors complete concordance results obtained. HLA-DRB1*0403, *0406 found account 95% population studied. technique described technically simple since it essentially involves only amplifications per individual subtyping. particularly useful resolving combinations which are indistinguishable by PCR-SSO oligonucleotide) or

参考文章(13)
Lars-Göran Öfverstedt, Karin Hammarström, Neil Balgobin, Stellan Hjertén, Ulf Pettersson, Jyoti Chattopadhyaya, Rapid and quantitative recovery of DNA fragments from gels by displacement electrophoresis (isotachophoresis). Biochimica et Biophysica Acta. ,vol. 782, pp. 120- 126 ,(1984) , 10.1016/0167-4781(84)90014-9
X. Gao, S.W. Serjeantson, Diversity in HLA-DR4-related DR,DQ haplotypes in Australia, Oceania, and China. Human Immunology. ,vol. 32, pp. 269- 276 ,(1991) , 10.1016/0198-8859(91)90090-V
T. M. Clay, M. R. Howard, J. L. Bidwell, E. A. Bidwell, P. A. Raymond, J. E. Evans, B. A. Bradley, PCR‐SSO TYPING FOR DR4‐Dw SUBTYPES: APPLICATION TO UNRELATED BONE MARROW TRANSPLANT DONOR SELECTION European Journal of Immunogenetics. ,vol. 18, pp. 97- 104 ,(1991) , 10.1111/J.1744-313X.1991.TB00009.X
D. A. Savage, N. A. P. Wood, J. L. Bidwell, K. M. Hui, HLA‐DRB1*01 subtyping by heteroduplex analysis Tissue Antigens. ,vol. 45, pp. 120- 124 ,(1995) , 10.1111/J.1399-0039.1995.TB02428.X
Rosa Sorrentino, Isabella Cascino, Roberto Tosi, Subgrouping of DR4 alleles by DNA heteroduplex analysis. Human Immunology. ,vol. 33, pp. 18- 23 ,(1992) , 10.1016/0198-8859(92)90047-Q
Li-Ya Ju, Xue-Fan Gu, Rafika Bardie, R. Krishnamoorthy, Dominique Charron, A simple nonradioactive method of DNA typing for subsets of HLA-DR4: prevalence data on HLA-DR4 subsets in three diabetic population groups. Human Immunology. ,vol. 31, pp. 251- 258 ,(1991) , 10.1016/0198-8859(91)90096-R
C. Nevinny-Stickel, M. Hinzpeter, A. Andreas, E.D. Albert, NON‐RADIOACTIVE OLIGOTYPING FOR HLA‐DR1‐DRw10 USING POLYMERASE CHAIN REACTION, DIGOXIGENIN‐LABELLED OLIGONUCLEOTIDES AND CHEMILUMINESCENCE DETECTION European Journal of Immunogenetics. ,vol. 18, pp. 323- 332 ,(1991) , 10.1111/J.1744-313X.1991.TB00032.X
Kjersti S Rønningen, Anne Spurkland, Torstein Egeland, Thomas Iwe, Eimar Munthe, Frode Vartdal, Erik Thorsby, None, Rheumatoid arthritis may be primarily associated with HLA‐DR4 molecules sharing a particular sequence at residues 67–74 Tissue Antigens. ,vol. 36, pp. 235- 240 ,(1990) , 10.1111/J.1399-0039.1990.TB01834.X
J. Lee Nelson, Eric Mickelson, Susan Masewicz, Rob Harrington, Carin Dugowson, Thomas Koepsell, John A. Hansen, Dw14(DRB1*0404) is a Dw4-dependent risk factor for rheumatoid arthritis. Rethinking the "shared epitope" hypothesis. Tissue Antigens. ,vol. 38, pp. 145- 151 ,(1991) , 10.1111/J.1399-0039.1991.TB01888.X