The Contribution of Genetic and Epigenetic Mechanisms to Gene Silencing in Oligodendrogliomas

作者: Joseph F. Costello , Andrew W. Bollen , Chibo Hong

DOI:

关键词:

摘要: Very little is known of the genes and mechanisms contributing to genesis oligodendrogliomas, a subtype primary brain tumors. Using an integrated genetic epigenetic analysis we show that aberrant CpG island methylation most prevalent alteration in these tumors, majority methylated are independent regions affected by deletion. In contrast, subset gene-associated islands preferentially converging deletion, including putative zinc finger gene, ZNF342, located commonly deleted region at chromosome 19q13. ZNF342 expression specifically decreased oligodendrogliomas up-regulated glioma cell lines treated with demethylating agent, whereas level adjacent Gemin7, not consistently altered samples. This initial approach identifies novel targets gene silencing, provides more comprehensive view underlying oligodendrogliomas.

参考文章(25)
Takao Watanabe, Mitsutoshi Nakamura, Yasuhiro Yonekawa, Paul Kleihues, Hiroko Ohgaki, Promoter hypermethylation and homozygous deletion of the p14ARF and p16INK4a genes in oligodendrogliomas. Acta Neuropathologica. ,vol. 101, pp. 185- 189 ,(2001) , 10.1007/S004010000343
Daniel Pinkel, Richard Segraves, Damir Sudar, Steven Clark, Ian Poole, David Kowbel, Colin Collins, Wen-Lin Kuo, Chira Chen, Ye Zhai, Shanaz H. Dairkee, Britt-marie Ljung, Joe W. Gray, Donna G. Albertson, High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays Nature Genetics. ,vol. 20, pp. 207- 211 ,(1998) , 10.1038/2524
Peter A. Jones, Stephen B. Baylin, The fundamental role of epigenetic events in cancer Nature Reviews Genetics. ,vol. 3, pp. 415- 428 ,(2002) , 10.1038/NRG816
W Wechsler, L Liu, L Liu, G Reifenberger, G Reifenberger, J Reifenberger, C D James, V P Collins, V P Collins, Molecular genetic analysis of oligodendroglial tumors shows preferential allelic deletions on 19q and 1p. American Journal of Pathology. ,vol. 145, pp. 1175- 1190 ,(1994)
Dominic J. Smiraglia, Michael C. Frühwald, Joseph F. Costello, Sean P. McCormick, Zunyan Dai, Päivi Peltomäki, M.Sue O'Dorisio, Webster K. Cavenee, Christoph Plass, A new tool for the rapid cloning of amplified and hypermethylated human DNA sequences from restriction landmark genome scanning gels. Genomics. ,vol. 58, pp. 254- 262 ,(1999) , 10.1006/GENO.1999.5840
Justin S Smith, Benjamin Alderete, Yuriko Minn, Thomas J Borell, Arie Perry, Gayatry Mohapatra, Sandra M Hosek, David Kimmel, Judith O'Fallon, Allan Yates, Burt G Feuerstein, Peter C Burger, Bernd W Scheithauer, Robert B Jenkins, Localization of common deletion regions on 1p and 19q in human gliomas and their association with histological subtype Oncogene. ,vol. 18, pp. 4144- 4152 ,(1999) , 10.1038/SJ.ONC.1202759
Hui Li, Lois Myeroff, Dominic Smiraglia, Michael F Romero, Theresa P Pretlow, Lakshmi Kasturi, James Lutterbaugh, Ronald M Rerko, Graham Casey, Jean-Pierre Issa, Joseph Willis, James KV Willson, Christoph Plass, Sanford D Markowitz, None, SLC5A8, a sodium transporter, is a tumor suppressor gene silenced by methylation in human colon aberrant crypt foci and cancers Proceedings of the National Academy of Sciences of the United States of America. ,vol. 100, pp. 8412- 8417 ,(2003) , 10.1073/PNAS.1430846100
Giuseppe Zardo, Maarit I. Tiirikainen, Chibo Hong, Anjan Misra, Burt G. Feuerstein, Stanislav Volik, Colin C. Collins, Kathleen R. Lamborn, Andrew Bollen, Daniel Pinkel, Donna G. Albertson, Joseph F. Costello, Integrated genomic and epigenomic analyses pinpoint biallelic gene inactivation in tumors. Nature Genetics. ,vol. 32, pp. 453- 458 ,(2002) , 10.1038/NG1007
Ajay N Jain, Taku A Tokuyasu, Antoine M Snijders, Richard Segraves, Donna G Albertson, Daniel Pinkel, Fully Automatic Quantification of Microarray Image Data Genome Research. ,vol. 12, pp. 325- 332 ,(2002) , 10.1101/GR.210902
J. Gregory Cairncross, Keisuke Ueki, Magdelena C. Zlatescu, David K. Lisle, Dianne M. Finkelstein, Robert R. Hammond, Jonathan S. Silver, Paul C. Stark, David R. Macdonald, Yasushi Ino, David A. Ramsay, David N. Louis, Specific Genetic Predictors of Chemotherapeutic Response and Survival in Patients With Anaplastic Oligodendrogliomas Journal of the National Cancer Institute. ,vol. 90, pp. 1473- 1479 ,(1998) , 10.1093/JNCI/90.19.1473