Molecular phylogenetics, temporal diversification, and principles of evolution in the mustard family (Brassicaceae).

作者: T. L. P. Couvreur , A. Franzke , I. A. Al-Shehbaz , F. T. Bakker , M. A. Koch

DOI: 10.1093/MOLBEV/MSP202

关键词:

摘要: Brassicaceae is an important family at both the agronomic and scientific level. The not only inlcudes several model species, but it also becoming evolutionary However, resolving phylogenetic relationships within has been problematic, a large-scale molecular phylogeny in terms of generic sampling number genes still lacking. In particular, deeper family, for example between three major recognized lineages, prove particularly hard to resolve. Using slow-evolving mitochondrial marker (nad4 intron 1), we reconstructed comprehensive representation family. addition, because resolution was very low previous single phylogenies, adopted supermatrix approach by concatenating all checked reliable sequences available on GenBank as well new total 207 currently genera eight markers representing coverage genomes. dated under uncorrelated relaxed clock using direct fossil calibration approach. Finally, lineage-through-time-plot rates diversification were generated. resulting tree, largest sampled date covering whole representative way, provides insights into evolution broad scale. backbone tree remained largely unresolved interpreted consequence early rapid radiation age inferred be 37.6 (24.2–49.4) Ma, which agrees with studies. ages lineages tribes are reported. Analysis suggests that underwent period diversification, after split diverging tribe Aethionemeae. Given dates found here, appears have originated warm humid climate approximately 37 Ma. We suggest detected caused global cooling during Oligocene coupled genome duplication event. This could allowed rapidly adapt changing climate.

参考文章(130)
Andreas Franzke, Dmitry German, Ihsan A. Al-Shehbaz, Klaus Mummenhoff, Arabidopsis family ties: molecular phylogeny and age estimates in Brassicaceae Taxon. ,vol. 58, pp. 425- 437 ,(2009) , 10.1002/TAX.582009
Daniel S. Moen, John J. Wiens, Missing data and the accuracy of Bayesian phylogenetics Journal of Systematics and Evolution. ,vol. 46, pp. 307- 314 ,(2008) , 10.3724/SP.J.1002.2008.08040
Matthias Jamin, Markus E. Lautenbacher, TRACER version 1.1: A mathematica package for γ-algebra in arbitrary dimensions Computer Physics Communications. ,vol. 74, pp. 265- 288 ,(1993) , 10.1016/0010-4655(93)90097-V
Maria D. Ermolaeva, Martin Wu, Jonathan A. Eisen, Steven L. Salzberg, The age of the Arabidopsis thaliana genome duplication. Plant Molecular Biology. ,vol. 51, pp. 859- 866 ,(2003) , 10.1023/A:1023001130337
Yufeng Wang, Xun Gu, Evolutionary Patterns of Gene Families Generated in the Early Stage of Vertebrates Journal of Molecular Evolution. ,vol. 51, pp. 88- 96 ,(2000) , 10.1007/S002390010069
L.W. Chatrou, J.B. Mols, R.H.J. Erkens, J.E. Richardson, M.D. Pirie, J.W. Maas, T. van der Niet, Phylogeny reconstruction and molecular dating in four Neotropical genera of Annonaceae: the effect of taxon sampling in age estimations Plant Species-level Systematics: new perspectives on pattern & process. pp. 149- 174 ,(2005)
Robert A. Voeks, Peter Goldblatt, Biological relationships between Africa and South America Geographical Review. ,vol. 85, pp. 115- ,(1995) , 10.2307/215565
Pamela S. Soltis, Ancient and recent polyploidy in angiosperms New Phytologist. ,vol. 166, pp. 5- 8 ,(2005) , 10.1111/J.1469-8137.2005.01379.X
Robert A. Price, Jeff J. Doyle, C. Donovan Bailey, C. Donovan Bailey, Systematics of the Halimolobine Brassicaceae: Evidence from Three Loci and Morphology Systematic Botany. ,vol. 27, pp. 318- 332 ,(2002) , 10.1043/0363-6445-27.2.318