Genome analysis of food grade lactic Acid-producing bacteria: from basics to applications.

作者: B. Mayo , D. Sinderen , M. Ventura

DOI: 10.2174/138920208784340731

关键词:

摘要: Whole-genome sequencing has revolutionized and accelerated scientific research that aims to study the genetics, biochemistry molecular biology of bacteria. Lactic acid-producing bacteria, which include lactic acid bacteria (LAB) bifidobacteria, are typically Gram-positive, catalase-negative organisms, occupy a wide range natural plant- animal-associated environments. LAB species frequently involved in transformation perishable raw materials into more stable, pleasant, palatable safe fermented food products. bifidobacteria also found among resident microbiota gastrointestinal and/or genitourinary tracts vertebrates, where they believed exert health-promoting effects. At present, genomes than 20 bifidobacterial have been completely sequenced. Their genome content reflects its specific metabolism, physiology, biosynthetic capabilities, adaptability varying conditions The typical LAB/bifidobacterial is relatively small (from 1.7 3.3 Mb) thus harbors limited assortment genes around 1,600 over 3,000). These code for broad array transporters efficient carbon nitrogen assimilation from nutritionally-rich niches usually inhabit, specify rather degrading capabilities. variation number suggests evolution each these bacterial groups processes extensive gene loss their particular ancestor, diversification certain common biological activities through duplication, acquisition key functions via horizontal transfer. availability sequences expected revolutionize exploitation metabolic potential improving use bioprocessing utilization biotechnological health-related applications.

参考文章(105)
Julian Marchesi, Fergus Shanahan, The normal intestinal microbiota. Current Opinion in Infectious Diseases. ,vol. 20, pp. 508- 513 ,(2007) , 10.1097/QCO.0B013E3282A56A99
Maarten Van De Guchte, Stéphanie Penaud, Christine Grimaldi, Valérie Barbe, K Bryson, Pierre Nicolas, C Robert, S Oztas, S Mangenot, A Couloux, V Loux, R Dervyn, R Bossy, A Bolotin, J-M Batto, T Walunas, J-F Gibrat, P Bessieres, J Weissenbach, SD Ehrlich, E Maguin, None, The complete genome sequence of Lactobacillus bulgaricus reveals extensive and ongoing reductive evolution Proceedings of the National Academy of Sciences of the United States of America. ,vol. 103, pp. 9274- 9279 ,(2006) , 10.1073/PNAS.0603024103
Gerald F. Fitzgerald, Michael J. Gasson, In vivo gene transfer systems and transposons. Biochimie. ,vol. 70, pp. 489- 502 ,(1988) , 10.1016/0300-9084(88)90085-5
Valérie Gagnaire, Michel Piot, Bénédicte Camier, Johannes PC Vissers, Gwénaël Jan, Joëlle Léonil, Survey of bacterial proteins released in cheese: a proteomic approach International Journal of Food Microbiology. ,vol. 94, pp. 185- 201 ,(2004) , 10.1016/J.IJFOODMICRO.2004.01.010
Sinéad C. Corr, Yin Li, Christian U. Riedel, Paul W. O'Toole, Colin Hill, Cormac G. M. Gahan, Bacteriocin production as a mechanism for the antiinfective activity of Lactobacillus salivarius UCC118 Proceedings of the National Academy of Sciences of the United States of America. ,vol. 104, pp. 7617- 7621 ,(2007) , 10.1073/PNAS.0700440104
Eman H.E Ayad, Annette Verheul, Catrienus de Jong, Jan T.M Wouters, Gerrit Smit, Flavour forming abilities and amino acid requirements of Lactococcus lactis strains isolated from artisanal and non-dairy origin International Dairy Journal. ,vol. 9, pp. 725- 735 ,(1999) , 10.1016/S0958-6946(99)00140-5
Willem M. Vos, Elaine E. Vaughan, Genetics of lactose utilization in lactic acid bacteria Fems Microbiology Reviews. ,vol. 15, pp. 217- 237 ,(1994) , 10.1111/J.1574-6976.1994.TB00136.X
R. D. Pridmore, B. Berger, F. Desiere, D. Vilanova, C. Barretto, A.-C. Pittet, M.-C. Zwahlen, M. Rouvet, E. Altermann, R. Barrangou, B. Mollet, A. Mercenier, T. Klaenhammer, F. Arigoni, M. A. Schell, The genome sequence of the probiotic intestinal bacterium Lactobacillus johnsonii NCC 533 Proceedings of the National Academy of Sciences of the United States of America. ,vol. 101, pp. 2512- 2517 ,(2004) , 10.1073/PNAS.0307327101
Michael J. McLean, Kenneth H. Wolfe, Kevin M. Devine, Base Composition Skews, Replication Orientation, and Gene Orientation in 12 Prokaryote Genomes Journal of Molecular Evolution. ,vol. 47, pp. 691- 696 ,(1998) , 10.1007/PL00006428
M. J. Claesson, Y. Li, S. Leahy, C. Canchaya, J. P. van Pijkeren, A. M. Cerdeno-Tarraga, J. Parkhill, S. Flynn, G. C. O'Sullivan, J. K. Collins, D. Higgins, F. Shanahan, G. F. Fitzgerald, D. van Sinderen, P. W. O'Toole, Multireplicon genome architecture of Lactobacillus salivarius Proceedings of the National Academy of Sciences of the United States of America. ,vol. 103, pp. 6718- 6723 ,(2006) , 10.1073/PNAS.0511060103