Computational approaches to identify promoters and cis-regulatory elements in plant genomes.
作者： Stephane Rombauts , Kobe Florquin , Magali Lescot , Kathleen Marchal , Pierre Rouzé
关键词:
摘要: … Here, we review the different approaches that have been developed for identifying promoters and their regulatory elements. We discuss the detection of cis-acting regulatory elements …
plantphysiol.org
oup.com
core.ac.uk参考文章(198)
Wyeth W. Wasserman, Michael Palumbo, William Thompson, James W. Fickett, Charles E. Lawrence, Human-mouse genome comparisons to locate regulatory sites. Nature Genetics. ,vol. 26, pp. 225- 228 ,(2000) , 10.1038/79965
K. J. Breslauer, R. Frank, H. Blocker, L. A. Marky, Predicting DNA duplex stability from the base sequence. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 83, pp. 3746- 3750 ,(1986) , 10.1073/PNAS.83.11.3746
Stephen Buratowski, Snapshots of RNA polymerase II transcription initiation. Current Opinion in Cell Biology. ,vol. 12, pp. 320- 325 ,(2000) , 10.1016/S0955-0674(00)00095-8
J. Zhu, M. Q. Zhang, SCPD: a promoter database of the yeast Saccharomyces cerevisiae. international conference on bioinformatics. ,vol. 15, pp. 607- 611 ,(1999) , 10.1093/BIOINFORMATICS/15.7.607
Arnold J Berk, ACTIVATION OF RNA POLYMERASE II TRANSCRIPTION Current Opinion in Cell Biology. ,vol. 11, pp. 330- 335 ,(1999) , 10.1016/S0955-0674(99)80045-3
Andrew Travers, Horace Drew, DNA recognition and nucleosome organization. Biopolymers. ,vol. 44, pp. 423- 433 ,(1997) , 10.1002/(SICI)1097-0282(1997)44:4<423::AID-BIP6>3.0.CO;2-M
Robert J. Lipshutz, Stephen P.A. Fodor, Thomas R. Gingeras, David J. Lockhart, High density synthetic oligonucleotide arrays Nature Genetics. ,vol. 21, pp. 20- 24 ,(1999) , 10.1038/4447
Andrey A. Gorin, Victor B. Zhurkin, Wilma K., B-DNA Twisting Correlates with Base-pair Morphology Journal of Molecular Biology. ,vol. 247, pp. 34- 48 ,(1995) , 10.1006/JMBI.1994.0120
SOPHIE SCHBATH, An efficient statistic to detect over- and under-represented words in DNA sequences. Journal of Computational Biology. ,vol. 4, pp. 189- 192 ,(1997) , 10.1089/CMB.1997.4.189
J. van Helden, B. André, J. Collado-Vides, Extracting Regulatory Sites from the Upstream Region of Yeast Genes by Computational Analysis of Oligonucleotide Frequencies Journal of Molecular Biology. ,vol. 281, pp. 827- 842 ,(1998) , 10.1006/JMBI.1998.1947