dPCR application in liquid biopsies: divide and conquer.

作者: Andrea Moreno-Manuel , Silvia Calabuig-Fariñas , Antonia Obrador-Hevia , Ana Blasco , Amaya Fernández-Díaz

DOI: 10.1080/14737159.2021.1860759

关键词:

摘要: Introduction: Precision medicine is already a reality in oncology, since biomarker-driven therapies have clearly improved patient survival. Furthermore, new, minimally invasive strategy termed 'liquid biopsy' (LB) has revolutionized the field by allowing comprehensive cancer genomic profiling through analysis of circulating tumor DNA (ctDNA). However, its detection requires extremely sensitive and efficient technologies. A powerful molecular tool based on principle 'divide conquer' emerged to solve this problem. Thus, digital PCR (dPCR) allows absolute accurate quantification target molecules.Areas covered: In review we will discuss fundamentals dPCR most common approaches used for partition samples quantification. The advantages limitations be mentioned context LB oncology.Expert opinion: our opinion, proven one methods available analysis, albeit some aspects such as capacity multiplexing protocol standardization still require further improvements. increasing sensitivities lower costs next generation sequencing (NGS) position confirmatory complementary technique NGS results which likely prove very useful treatment monitoring assessing minimal residual disease.

参考文章(115)
M J Brisco, A A Morley, P J Sykes, E Hughes, J Condon, S H Neoh, Quantitation of targets for PCR by use of limiting dilution. BioTechniques. ,vol. 13, pp. 444- 449 ,(1992)
Simon Chang-Hao Tsao, Jonathan Weiss, Christopher Hudson, Christopher Christophi, Jonathan Cebon, Andreas Behren, Alexander Dobrovic, Monitoring response to therapy in melanoma by quantifying circulating tumour DNA with droplet digital PCR for BRAF and NRAS mutations Scientific Reports. ,vol. 5, pp. 11198- 11198 ,(2015) , 10.1038/SREP11198
Davide Conte, Carla Verri, Cristina Borzi, Paola Suatoni, Ugo Pastorino, Gabriella Sozzi, Orazio Fortunato, Novel method to detect microRNAs using chip-based QuantStudio 3D digital PCR. BMC Genomics. ,vol. 16, pp. 849- 849 ,(2015) , 10.1186/S12864-015-2097-9
David S Guttery, Karen Page, Allison Hills, Laura Woodley, Stephanie D Marchese, Basma Rghebi, Robert K Hastings, Jinli Luo, J Howard Pringle, Justin Stebbing, R Charles Coombes, Simak Ali, Jacqueline A Shaw, None, Noninvasive Detection of Activating Estrogen Receptor 1 (ESR1) Mutations in Estrogen Receptor–Positive Metastatic Breast Cancer Clinical Chemistry. ,vol. 61, pp. 974- 982 ,(2015) , 10.1373/CLINCHEM.2015.238717
Frank Diehl, Luis A Diaz, Digital quantification of mutant DNA in cancer patients. Current Opinion in Oncology. ,vol. 19, pp. 36- 42 ,(2007) , 10.1097/CCO.0B013E328011A8E7
Isaac Garcia-Murillas, Maryou Lambros, Nicholas C. Turner, Determination of HER2 Amplification Status on Tumour DNA by Digital PCR PLoS ONE. ,vol. 8, pp. e83409- ,(2013) , 10.1371/JOURNAL.PONE.0083409
T B Hao, W Shi, X J Shen, J Qi, X H Wu, Y Wu, Y Y Tang, S Q Ju, Circulating cell-free DNA in serum as a biomarker for diagnosis and prognostic prediction of colorectal cancer British Journal of Cancer. ,vol. 111, pp. 1482- 1489 ,(2014) , 10.1038/BJC.2014.470
Aaron M Newman, Scott V Bratman, Jacqueline To, Jacob F Wynne, Neville C W Eclov, Leslie A Modlin, Chih Long Liu, Joel W Neal, Heather A Wakelee, Robert E Merritt, Joseph B Shrager, Billy W Loo, Ash A Alizadeh, Maximilian Diehn, An ultrasensitive method for quantitating circulating tumor DNA with broad patient coverage Nature Medicine. ,vol. 20, pp. 548- 554 ,(2014) , 10.1038/NM.3519
Somanath Bhat, Jan Herrmann, Paul Armishaw, Philippe Corbisier, Kerry R. Emslie, Single molecule detection in nanofluidic digital array enables accurate measurement of DNA copy number Analytical and Bioanalytical Chemistry. ,vol. 394, pp. 457- 467 ,(2009) , 10.1007/S00216-009-2729-5
Frank Diehl, Meng Li, Yiping He, Kenneth W Kinzler, Bert Vogelstein, Devin Dressman, BEAMing: single-molecule PCR on microparticles in water-in-oil emulsions Nature Methods. ,vol. 3, pp. 551- 559 ,(2006) , 10.1038/NMETH898