Atomic Resolution Crystal Structure of Hydroxynitrile Lyase from Hevea Brasiliensis

作者: K. Gruber , M. Gugganig , U. G. Wagner , C. Kratky

DOI: 10.1515/BC.1999.123

关键词:

摘要: The X-ray crystal structure of native hydroxynitrile lyase from Hevea brasiliensis (Hb-HNL) has been determined at 1.1 A resolution. It refined to a final R 11.5% for all data and an Rfree 14.4%. favorable data-to-parameter ratio atomic resolution made the refinement individual anisotropic displacement parameters possible. also allowed clear distinction alternate orientations histidine majority asparagine glutamine side chains. number hydrogen atoms, including one on imidazole mechanistically important His-235, became visible as peaks in difference electron density map. revealed discretely disordered sidechain Ser-80, which is part putative catalytic triad. Analysis anisotropy indicated increased mobility residues near entrance active site within site.

参考文章(26)
Dean V. Johnson, Herfried Griengl, Biocatalytic Applications of Hydroxynitrile Lyases Advances in Biochemical Engineering \/ Biotechnology. ,vol. 63, pp. 31- 55 ,(1999) , 10.1007/3-540-69791-8_2
Frances C. Bernstein, Thomas F. Koetzle, Graheme J.B. Williams, Edgar F. Meyer, Michael D. Brice, John R. Rodgers, Olga Kennard, Takehiko Shimanouchi, Mitsuo Tasumi, The Protein Data Bank: a computer-based archival file for macromolecular structures. Journal of Molecular Biology. ,vol. 112, pp. 535- 542 ,(1977) , 10.1016/S0022-2836(77)80200-3
R. A. Laskowski, M. W. MacArthur, D. S. Moss, J. M. Thornton, PROCHECK: a program to check the stereochemical quality of protein structures Journal of Applied Crystallography. ,vol. 26, pp. 283- 291 ,(1993) , 10.1107/S0021889892009944
R. J. Read, Improved Fourier coefficients for maps using phases from partial structures with errors Acta Crystallographica Section A. ,vol. 42, pp. 140- 149 ,(1986) , 10.1107/S0108767386099622
G. W. Kuroki, E. E. Conn, Mandelonitrile lyase from Ximenia americana L.: stereospecificity and lack of flavin prosthetic group. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 86, pp. 6978- 6981 ,(1989) , 10.1073/PNAS.86.18.6978
Norbert Klempier, Ulrike Pichler, Herfried Griengl, Synthesis of α,β-unsaturated (S)-cyanohydrins using the oxynitrilase from Hevea brasiliensis Tetrahedron-asymmetry. ,vol. 6, pp. 845- 848 ,(1995) , 10.1016/0957-4166(95)00085-4
Harald Wajant, Klaus Pfizenmaier, Identification of Potential Active-site Residues in the Hydroxynitrile Lyase fromManihot esculentaby Site-directed Mutagenesis Journal of Biological Chemistry. ,vol. 271, pp. 25830- 25834 ,(1996) , 10.1074/JBC.271.42.25830
T. A. Jones, J. Y. Zou, S. W. Cowan, M. Kjeldgaard, Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallographica Section A. ,vol. 47, pp. 110- 119 ,(1991) , 10.1107/S0108767390010224
Gerard J Kleywegt, Axel T Brünger, Checking your imagination: applications of the free R value Structure. ,vol. 4, pp. 897- 904 ,(1996) , 10.1016/S0969-2126(96)00097-4