Late acquisition of mitochondria by a host with chimaeric prokaryotic ancestry

作者: Alexandros A. Pittis , Toni Gabaldón

DOI: 10.1038/NATURE16941

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摘要: Evidence that among the eukaryotic ancestor genes, those derived from proto-mitochondrion have closest evolutionary distances to their bacterial relatives. The eukaryote cell is so much larger and more complex than cells of bacteria archaea it hard recreate steps whereby evolved. One current view evolution eukaryotes was triggered when an archaea-like accommodated went on become mitochondria. An alternative were well way modern form before they acquired became This second supported by a study Alexandros Pittis Toni Gabaldon showing mitochondrial genes are closely similar supposed relations many other own inferred prokaryote cousins. result, which challenges views, suggests mitochondria late additions already evolving. origin stands as major conundrum in biology1. Current evidence indicates last common possessed hallmarks, including subcellular organization1,2,3. In addition, lack intermediates elucidation relative order emergence traits. Mitochondria ubiquitous organelles alphaproteobacterial endosymbiont4. Different hypotheses disagree whether early or during eukaryogenesis5. Similarly, nature complexity receiving host debated, with models ranging simple prokaryotic proto-eukaryote1,3,6,7. Most competing scenarios can be roughly grouped into either mito-early, consider driving force eukaryogenesis endosymbiosis host, mito-late, postulate significant predated endosymbiosis3. Here we provide for endosymbiosis. We use phylogenomics directly test proto-mitochondrial proteins earlier later ancestor. find protein families ancestry localization show shortest phylogenetic relatives, compared different cellular localization. Altogether, our results shed new light long-standing question compelling support acquisition had proteome chimaeric origin. argue one ultimate provided definitive selective advantage mitochondria-bearing over less forms.

参考文章(29)
Anja Spang, Jimmy H. Saw, Steffen L. Jørgensen, Katarzyna Zaremba-Niedzwiedzka, Joran Martijn, Anders E. Lind, Roel van Eijk, Christa Schleper, Lionel Guy, Thijs J. G. Ettema, Complex archaea that bridge the gap between prokaryotes and eukaryotes Nature. ,vol. 521, pp. 173- 179 ,(2015) , 10.1038/NATURE14447
Jaime Huerta-Cepas, Joaquín Dopazo, Toni Gabaldón, ETE: a python Environment for Tree Exploration. BMC Bioinformatics. ,vol. 11, pp. 24- 24 ,(2010) , 10.1186/1471-2105-11-24
Sean Powell, Kristoffer Forslund, Damian Szklarczyk, Kalliopi Trachana, Alexander Roth, Jaime Huerta-Cepas, Toni Gabaldon, Thomas Rattei, Chris Creevey, Michael Kuhn, Lars J Jensen, Christian Von Mering, Peer Bork, None, eggNOG v4.0: nested orthology inference across 3686 organisms Nucleic Acids Research. ,vol. 42, pp. 231- 239 ,(2014) , 10.1093/NAR/GKT1253
Joran Martijn, Thijs J.G. Ettema, From archaeon to eukaryote: the evolutionary dark ages of the eukaryotic cell. Biochemical Society Transactions. ,vol. 41, pp. 451- 457 ,(2013) , 10.1042/BST20120292
J. Huerta-Cepas, S. Capella-Gutierrez, L. P. Pryszcz, I. Denisov, D. Kormes, M. Marcet-Houben, T. Gabaldon, PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions Nucleic Acids Research. ,vol. 39, pp. 556- 560 ,(2011) , 10.1093/NAR/GKQ1109
Morgan N. Price, Paramvir S. Dehal, Adam P. Arkin, FastTree 2--approximately maximum-likelihood trees for large alignments. PLOS ONE. ,vol. 5, ,(2010) , 10.1371/JOURNAL.PONE.0009490
Toni Gabaldón, Eugene V. Koonin, Functional and evolutionary implications of gene orthology Nature Reviews Genetics. ,vol. 14, pp. 360- 366 ,(2013) , 10.1038/NRG3456
V. Lila Koumandou, Bill Wickstead, Michael L. Ginger, Mark van der Giezen, Joel B. Dacks, Mark C. Field, Molecular paleontology and complexity in the last eukaryotic common ancestor Critical Reviews in Biochemistry and Molecular Biology. ,vol. 48, pp. 373- 396 ,(2013) , 10.3109/10409238.2013.821444
T. Martin Embley, William Martin, Eukaryotic evolution, changes and challenges Nature. ,vol. 440, pp. 623- 630 ,(2006) , 10.1038/NATURE04546
Toni Gabaldón, Martijn A. Huynen, Shaping the mitochondrial proteome. Biochimica et Biophysica Acta. ,vol. 1659, pp. 212- 220 ,(2004) , 10.1016/J.BBABIO.2004.07.011