Thermodynamic insights into 2-thiouridine-enhanced RNA hybridization

作者: Aaron T. Larsen , Albert C. Fahrenbach , Jia Sheng , Julia Pian , Jack W. Szostak

DOI: 10.1093/NAR/GKV761

关键词:

摘要: … The recently reported crystal structures of s 2 U-containing RNA duplexes do not … here thermodynamic evaluations of duplex formation using ITC and UV thermal denaturation with RNA …

参考文章(56)
John van Wijk, Bernard D. Huckriede, Johannes H. Ippel, Cornelis Altona, Furanose sugar conformations in DNA from NMR coupling constants. Methods in Enzymology. ,vol. 211, pp. 286- 306 ,(1992) , 10.1016/0076-6879(92)11017-D
Paul F. Agris, Hanna Sierzputowska-Gracz, Wanda Smith, A. Malkiewicz, Elzbieta Sochacka, Barbara Nawrot, Thiolation of uridine carbon-2 restricts the motional dynamics of the transfer RNA wobble position nucleoside Journal of the American Chemical Society. ,vol. 114, pp. 2652- 2656 ,(1992) , 10.1021/JA00033A044
D. Cremer, J. A. Pople, General definition of ring puckering coordinates Journal of the American Chemical Society. ,vol. 97, pp. 1354- 1358 ,(1975) , 10.1021/JA00839A011
Sunil K. Mazumdar, Wolfram Saenger, Karl Heinz Scheit, Molecular structure of poly-2-thiouridylic acid, a double helix with non-equivalent polynucleotide chains. Journal of Molecular Biology. ,vol. 85, pp. 213- 229 ,(1974) , 10.1016/0022-2836(74)90361-1
Stephen M. Testa, Matthew D. Disney, Douglas H. Turner, Ryszard Kierzek, Thermodynamics of RNA-RNA duplexes with 2- or 4-thiouridines: implications for antisense design and targeting a group I intron. Biochemistry. ,vol. 38, pp. 16655- 16662 ,(1999) , 10.1021/BI991187D
David H. Mathews, Jeffrey Sabina, Michael Zuker, Douglas H. Turner, Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure Journal of Molecular Biology. ,vol. 288, pp. 911- 940 ,(1999) , 10.1006/JMBI.1999.2700
Pascal Auffinger, Eric Westhof, Hydration of RNA base pairs. Journal of Biomolecular Structure & Dynamics. ,vol. 16, pp. 693- 707 ,(1998) , 10.1080/07391102.1998.10508281
Jia Sheng, Aaron Larsen, Benjamin D. Heuberger, J. Craig Blain, Jack W. Szostak, Crystal Structure Studies of RNA Duplexes Containing s(2)U:A and s(2)U:U Base Pairs. Journal of the American Chemical Society. ,vol. 136, pp. 13916- 13924 ,(2014) , 10.1021/JA508015A
N. A. Baker, D. Sept, S. Joseph, M. J. Holst, J. A. McCammon, Electrostatics of nanosystems: Application to microtubules and the ribosome Proceedings of the National Academy of Sciences of the United States of America. ,vol. 98, pp. 10037- 10041 ,(2001) , 10.1073/PNAS.181342398