A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome

John A. Calarco, Arneet L. Saltzman, Joanna Y. Ip, Benjamin J. Blencowe, Technologies for the global discovery and analysis of alternative splicing. Advances in Experimental Medicine and Biology. ,vol. 623, pp. 64- 84 ,(2007) , 10.1007/978-0-387-77374-2_5

Marshall P. Byrd, Miguel Zamora, Richard E. Lloyd, Translation of Eukaryotic Translation Initiation Factor 4GI (eIF4GI) Proceeds from Multiple mRNAs Containing a Novel Cap-dependent Internal Ribosome Entry Site (IRES) That Is Active during Poliovirus Infection Journal of Biological Chemistry. ,vol. 280, pp. 18610- 18622 ,(2005) , 10.1074/JBC.M414014200

J. B. Kim, G. J. Porreca, L. Song, S. C. Greenway, J. M. Gorham, G. M. Church, C. E. Seidman, J. G. Seidman, Polony multiplex analysis of gene expression (PMAGE) in mouse hypertrophic cardiomyopathy. Science. ,vol. 316, pp. 1481- 1484 ,(2007) , 10.1126/SCIENCE.1137325

Gregory G. Lennon, Hans Lehrach, Hybridization analyses of arrayed cDNA libraries Trends in Genetics. ,vol. 7, pp. 314- 317 ,(1991) , 10.1016/0168-9525(91)90420-U

U. Nagalakshmi, Z. Wang, K. Waern, C. Shou, D. Raha, M. Gerstein, M. Snyder, The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing Science. ,vol. 320, pp. 1344- 1349 ,(2008) , 10.1126/SCIENCE.1158441

Qun Pan, Ofer Shai, Christine Misquitta, Wen Zhang, Arneet L. Saltzman, Naveed Mohammad, Tomas Babak, Henry Siu, Timothy R. Hughes, Quaid D. Morris, Brendan J. Frey, Benjamin J. Blencowe, Revealing global regulatory features of mammalian alternative splicing using a quantitative microarray platform. Molecular Cell. ,vol. 16, pp. 929- 941 ,(2004) , 10.1016/J.MOLCEL.2004.12.004

Thanasis Margaritis, Frank C.P. Holstege, Poised RNA polymerase II gives pause for thought. Cell. ,vol. 133, pp. 581- 584 ,(2008) , 10.1016/J.CELL.2008.04.027

Leming Shi, Laura H Reid, Wendell D Jones, Richard Shippy, Janet A Warrington, Shawn C Baker, Patrick J Collins, Francoise De Longueville, Ernest S Kawasaki, Kathleen Y Lee, Yuling Luo, Yongming Andrew Sun, James C Willey, Robert A Setterquist, Gavin M Fischer, Weida Tong, Yvonne P Dragan, David J Dix, Felix W Frueh, Federico M Goodsaid, Damir Herman, Roderick V Jensen, Charles D Johnson, Edward K Lobenhofer, Raj K Puri, Uwe Schrf, Jean Thierry-Mieg, Charles Wang, Mike Wilson, Paul K Wolber, Lu Zhang, Shashi Amur, Wenjun Bao, Catalin C Barbacioru, Anne Bergstrom Lucas, Vincent Bertholet, Cecilie Boysen, Bud Bromley, Donna Brown, Alan Brunner, Roger Canales, Xiaoxi Megan Cao, Thomas A Cebula, James J Chen, Jing Cheng, Tzu-Ming Chu, Eugene Chudin, John Corson, J Christopher Corton, Lisa J Croner, Christopher Davies, Timothy S Davison, Glenda Delenstarr, Xutao Deng, David Dorris, Aron C Eklund, Xiao-Hui Fan, Hong Fang, Stephanie Fulmer-Smentek, James C Fuscoe, Kathryn Gallagher, Weigong Ge, Lei Guo, Xu Guo, Janet Hager, Paul K Haje, Jing Han, Tao Han, Heather C Harbottle, Stephen C Harris, Eli Hatchwell, Craig A Hauser, Susan Hester, Huixiao Hong, Patrick Hurban, Scott A Jackson, Hanlee Ji, Charles R Knight, Winston P Kuo, J Eugene LeClerc, Shawn Levy, Quan-Zhen Li, Chunmei Liu, Ying Liu, Michael J Lombardi, Yunqing Ma, Scott R Magnuson, Botoul Maqsodi, Tim McDaniel, Nan Mei, Ola Myklebost, Baitang Ning, Natalia Novoradovskaya, Michael S Orr, Terry W Osborn, Adam Papallo, Tucker A Patterson, Roger G Perkins, Elizabeth H Peters, Ron Peterson, Kenneth L Philips, P Scott Pine, Lajos Pusztai, Feng Qian, Hongzu Ren, Mitch Rosen, Barry A Rosenzweig, Raymond R Samaha, Mark Schena, Gary P Schroth, Svetlana Shchegrova, Dave D Smith, Frank Staedtler, Zhenqiang Su, Hongmei Sun, Zoltan Szallasi, Zivana Tezak, Danielle Thierry-Mieg, Karol L Thompson, Irina Tikhonova, Yaron Turpaz, Beena Vallanat, Christophe Van, Stephen J Walker, Sue Jane Wang, Yonghong Wang, Russ Wolfinger, Alex Wong, Jie Wu, Chunlin Xiao, Qian Xie, Jun Xu, Wen Yang, S Zhong, Y Zong, W Slikker Jr, None, The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements Nature Biotechnology. ,vol. 24, pp. 1151- 1161 ,(2006) , 10.1038/NBT1239

V. E. Velculescu, L. Zhang, B. Vogelstein, K. W. Kinzler, Serial analysis of gene expression Science. ,vol. 270, pp. 484- 487 ,(2000) , 10.1126/SCIENCE.270.5235.484

Artem Barski, Suresh Cuddapah, Kairong Cui, Tae-Young Roh, Dustin E. Schones, Zhibin Wang, Gang Wei, Iouri Chepelev, Keji Zhao, High-resolution profiling of histone methylations in the human genome. Cell. ,vol. 129, pp. 823- 837 ,(2007) , 10.1016/J.CELL.2007.05.009