Characterization of natural populations of Nitrobacter spp. using PCR/RFLP analysis of the ribosomal intergenic spacer.

作者: Elisabeth Navarro , Pascal Simonet , Philippe Normand , René Bardin

DOI: 10.1007/BF00245277

关键词:

摘要: DNA sequences from the intergenic spacer (IGS) region of ribosomal operon were amplified by polymerase chain reaction (PCR) technique using two primers derived 16S and 23S rRNA conserved sequences. The PCR products, cleaved 4 base cutting restriction enzymes, used to differentiate Nitrobacter strains. This method offered a convenient alternative serological testing for characterization isolates enabled large number strains be genotypically characterized easily rapidly. was successfully characterize natural populations various soils lake. A diversity demonstrated in soils, lake both freshwater sediments. Strains closely related WL LL found these eco-systems. It seems that not associated with global environments but may presence locally coexisting niches.

参考文章(38)
Kary B. Mullis, Fred A. Faloona, Specific synthesis of DNA in vitro via a polymerase-catalyzed chain reaction. Methods in Enzymology. ,vol. 155, pp. 335- 350 ,(1987) , 10.1016/0076-6879(87)55023-6
C. B. Fliermans, B. B. Bohlool, E. L. Schmidt, Autecological Study of the Chemoautotroph Nitrobacter by Immunofluorescence Applied Microbiology. ,vol. 27, pp. 124- 129 ,(1974) , 10.1128/AM.27.1.124-129.1974
P. M. Stanley, E. L. Schmidt, Serological Diversity of Nitrobacter spp. from Soil and Aquatic Habitats † Applied and Environmental Microbiology. ,vol. 41, pp. 1069- 1071 ,(1981) , 10.1128/AEM.41.4.1069-1071.1981
L. W. Belser, E. L. Mays, Use of Nitrifier Activity Measurements To Estimate the Efficiency of Viable Nitrifier Counts in Soils and Sediments Applied and Environmental Microbiology. ,vol. 43, pp. 945- 948 ,(1982) , 10.1128/AEM.43.4.945-948.1982
S Nazaret, B Cournoyer, P Normand, P Simonet, Phylogenetic relationships among Frankia genomic species determined by use of amplified 16S rDNA sequences. Journal of Bacteriology. ,vol. 173, pp. 4072- 4078 ,(1991) , 10.1128/JB.173.13.4072-4078.1991
W C Bradbury, A D Pearson, M A Marko, R V Congi, J L Penner, Investigation of a Campylobacter jejuni outbreak by serotyping and chromosomal restriction endonuclease analysis. Journal of Clinical Microbiology. ,vol. 19, pp. 342- 346 ,(1984) , 10.1128/JCM.19.3.342-346.1984
PM Stanley, MA Gage, EL Schmidt, Enumeration of Scientific Populations by Immunofluorescence ASTM special technical publications. pp. 46- 55 ,(1979) , 10.1520/STP36002S
Elke Seewaldt, Karl-Heinz Schleifer, Eberhard Bock, Erko Stackebrandt, The close phylogenetic relationship of Nitrobacter and Rhodopseudomonas palustris Archives of Microbiology. ,vol. 131, pp. 287- 290 ,(1982) , 10.1007/BF00405895
Jürgen Brosius, Thomas J. Dull, Donald D. Sleeter, Harry F. Noller, Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli Journal of Molecular Biology. ,vol. 148, pp. 107- 127 ,(1981) , 10.1016/0022-2836(81)90508-8
P. Pérolat, F. Grimont, B. Regnault, P.A.D. Grimont, E. Fournié, H. Thevenet, G. Baranton, rRNA gene restriction patterns of Leptospira: a molecular typing system. Research in Microbiology. ,vol. 141, pp. 159- 171 ,(1990) , 10.1016/0923-2508(90)90025-L