Pyrosequencing Characterization of the Microbiota from Atlantic Intertidal Marine Sponges Reveals High Microbial Diversity and the Lack of Co-Occurrence Patterns

作者: Anoop Alex , Agostinho Antunes

DOI: 10.1371/JOURNAL.PONE.0127455

关键词:

摘要: Sponges are ancient metazoans that host diverse and complex microbial communities. Sponge-associated diversity has been studied from wide oceans across the globe, particularly in subtidal regions, but communities intertidal sponges have remained mostly unexplored. Here we used pyrosequencing to characterize 12 different co-occurring marine sponge species sampled Atlantic coast, revealing a total of 686 operational taxonomic units (OTUs) at 97% sequence similarity. Taxonomic assignment 16S ribosomal RNA tag sequences estimated altogether 26 groups, represented by bacterial (75.5%) archaeal (22%) domains. Proteobacteria (43.4%) Crenarchaeota (20.6%) were most dominant groups detected all ambient seawater. The microbes three Ocean had close similarity with geographically separated Red Sea sponges. Our study showed observed (73%) also found surrounding seawater suggesting possible environmental acquisition and/or horizontal transfer microbes. Beyond community structure assessments (NMDS, ADONIS, ANOSIM), explored interactions between coexisting using checkerboard score (C-score). Analyses association pattern (co-occurrence) among sympatric revealed random microbes, favoring hypothesis sponge-inhabiting recruited habitat chance or influenced factors benefit hosts.

参考文章(84)
Rachel L. Simister, Peter Deines, Emmanuelle S. Botté, Nicole S. Webster, Michael W. Taylor, Sponge-specific clusters revisited: a comprehensive phylogeny of sponge-associated microorganisms. Environmental Microbiology. ,vol. 14, pp. 517- 524 ,(2012) , 10.1111/J.1462-2920.2011.02664.X
C. WILKINSON, R. GARRONE, NUTRITION OF MARINE SPONGES. INVOLVEMENT OF SYMBIOTIC BACTERIA IN THE UPTAKE OF DISSOLVED CARBON Nutrition in the Lower Metazoa#R##N#Proceedings of a Meeting Held at The University of Caen, France, 11–13 September 1979. pp. 157- 161 ,(1980) , 10.1016/B978-0-08-025904-8.50016-X
Albert Barberán, Scott T Bates, Emilio O Casamayor, Noah Fierer, Using network analysis to explore co-occurrence patterns in soil microbial communities The ISME Journal. ,vol. 6, pp. 343- 351 ,(2012) , 10.1038/ISMEJ.2011.119
Lewi Stone, Alan Roberts, The checkerboard score and species distributions. Oecologia. ,vol. 85, pp. 74- 79 ,(1990) , 10.1007/BF00317345
Edward F DeLong, Ke Ying Wu, Barbara B Prézelin, Raffael VM Jovine, None, High abundance of Archaea in Antarctic marine picoplankton Nature. ,vol. 371, pp. 695- 697 ,(1994) , 10.1038/371695A0
E. W. Schmidt, A. Y. Obraztsova, S. K. Davidson, D. J. Faulkner, M. G. Haygood, Identification of the antifungal peptide-containing symbiont of the marine sponge Theonella swinhoei as a novel δ-proteobacterium, "Candidatus Entotheonella palauensis" Marine Biology. ,vol. 136, pp. 969- 977 ,(2000) , 10.1007/S002270000273
Marie-Louise Lemloh, Jane Fromont, Franz Brümmer, Kayley M Usher, Diversity and abundance of photosynthetic sponges in temperate Western Australia BMC Ecology. ,vol. 9, pp. 4- 4 ,(2009) , 10.1186/1472-6785-9-4
Olivier Peraud, Russell T. Hill, Julie J. Enticknap, Michelle Kelly, Characterization of a Culturable Alphaproteobacterial Symbiont Common to Many Marine Sponges and Evidence for Vertical Transmission via Sponge Larvae Applied and Environmental Microbiology. ,vol. 72, pp. 3724- 3732 ,(2006) , 10.1128/AEM.72.5.3724-3732.2006
Ping Zhu, Quanzi Li, Guangyi Wang, Unique microbial signatures of the alien Hawaiian marine sponge "Suberites zeteki" Microbial Ecology. ,vol. 55, pp. 406- 414 ,(2008) , 10.1007/S00248-007-9285-3
Brian Chanas, Joseph R. Pawlik, Thomas Lindel, William Fenical, Chemical defense of the Caribbean sponge Agelas clathrodes (Schmidt) Journal of Experimental Marine Biology and Ecology. ,vol. 208, pp. 185- 196 ,(1997) , 10.1016/S0022-0981(96)02653-6