The Human Gene Mutation Database (HGMD) and its exploitation in the study of mutational mechanisms.

作者: David N. Cooper , Peter D. Stenson , Nadia A. Chuzhanova

DOI: 10.1002/0471250953.BI0113S12

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摘要: The Human Gene Mutation Database (HGMD) constitutes a comprehensive core collection of data on germ-line mutations in nuclear genes underlying or associated with human inherited disease (http://www.hgmd.org). Data cataloged include single base-pair substitutions coding, regulatory, and splicing-relevant regions, microdeletions microinsertions, indels, triplet repeat expansions, as well gross gene deletions, insertions, duplications, complex rearrangements. Each mutation is entered into HGMD only once, order to avoid confusion between recurrent identical-by-descent lesions. By June 2005, the database contained excess 53,000 different lesions detected 2029 genes, new entries currently accumulating at rate 5000 per annum. includes cDNA reference sequences, now provided for more than 90% listed splice junction data, disease-associated functional polymorphisms, links present publicly available online locus-specific databases.

参考文章(25)
Clesson Turner, Christina Killoran, Nick S. T. Thomas, Marjorie Rosenberg, Nadia A. Chuzhanova, Jennifer Johnston, Yelena Kemel, David N. Cooper, Leslie G. Biesecker, Human genetic disease caused by de novo mitochondrial-nuclear DNA transfer Human Genetics. ,vol. 112, pp. 303- 309 ,(2003) , 10.1007/S00439-002-0892-2
Guillaume Vogt, Ariane Chapgier, Kun Yang, Nadia Chuzhanova, Jacqueline Feinberg, Claire Fieschi, Stéphanie Boisson-Dupuis, Alexandre Alcais, Orchidée Filipe-Santos, Jacinta Bustamante, Ludovic De Beaucoudrey, Ibrahim Al-Mohsen, Sami Al-Hajjar, Abdulaziz Al-Ghonaium, Parisa Adimi, Mehdi Mirsaeidi, Soheila Khalilzadeh, Sergio Rosenzweig, Oscar de la Calle Martin, Thomas R Bauer, Jennifer M Puck, Hans D Ochs, Dieter Furthner, Carolin Engelhorn, Bernd Belohradsky, Davood Mansouri, Steven M Holland, Robert D Schreiber, Laurent Abel, David N Cooper, Claire Soudais, Jean-Laurent Casanova, None, Gains of glycosylation comprise an unexpectedly large group of pathogenic mutations Nature Genetics. ,vol. 37, pp. 692- 700 ,(2005) , 10.1038/NG1581
Michael Krawczak, Nadia Chuzhanova, Peter Stenson, Bent Johansen, Edward Ball, David Cooper, Changes in primary DNA sequence complexity influence the phenotypic consequences of mutations in human gene regulatory regions Human Genetics. ,vol. 107, pp. 362- 365 ,(2000) , 10.1007/S004390000393
Nadia A. Chuzhanova, Emmanuel J. Anassis, Edward V. Ball, Michael Krawczak, David N. Cooper, Meta-analysis of indels causing human genetic disease: mechanisms of mutagenesis and the role of local DNA sequence complexity Human Mutation. ,vol. 21, pp. 28- 44 ,(2003) , 10.1002/HUMU.10146
Shaun S. Abeysinghe, Nadia Chuzhanova, Michael Krawczak, Edward V. Ball, David N. Cooper, Translocation and gross deletion breakpoints in human inherited disease and cancer I: Nucleotide composition and recombination‐associated motifs Human Mutation. ,vol. 22, pp. 229- 244 ,(2003) , 10.1002/HUMU.10254
A. Bacolla, A. Jaworski, J. E. Larson, J. P. Jakupciak, N. Chuzhanova, S. S. Abeysinghe, C. D. O'Connell, D. N. Cooper, R. D. Wells, Breakpoints of gross deletions coincide with non-B DNA conformations Proceedings of the National Academy of Sciences of the United States of America. ,vol. 101, pp. 14162- 14167 ,(2004) , 10.1073/PNAS.0405974101
Laurent Balvay, Domenico Libri, Marc Y. Fiszman, Pre-mRNA secondary structure and the regulation of splicing BioEssays. ,vol. 15, pp. 165- 169 ,(1993) , 10.1002/BIES.950150304
Jean Frézal, Genatlas database, genes and development defects Comptes Rendus De L Academie Des Sciences Serie Iii-sciences De La Vie-life Sciences. ,vol. 321, pp. 805- 817 ,(1998) , 10.1016/S0764-4469(99)80021-3
Peter D. Stenson, Edward V. Ball, Matthew Mort, Andrew D. Phillips, Jacqueline A. Shiel, Nick S.T. Thomas, Shaun Abeysinghe, Michael Krawczak, David N. Cooper, Human Gene Mutation Database (HGMD): 2003 update. Human Mutation. ,vol. 21, pp. 577- 581 ,(2003) , 10.1002/HUMU.10212
David N. Cooper, Robert L. Nussbaum, Michael Krawczak, Proposed guidelines for papers describing DNA polymorphism-disease associations. Human Genetics. ,vol. 110, pp. 207- 208 ,(2002) , 10.1007/S00439-001-0672-4