Summary of the Available Molecular Methods for Detection of SARS-CoV-2 during the Ongoing Pandemic.

Isabel Sola, Fernando Almazán, Sonia Zúñiga, Luis Enjuanes, Continuous and Discontinuous RNA Synthesis in Coronaviruses Annual Review of Virology. ,vol. 2, pp. 265- 288 ,(2015) , 10.1146/ANNUREV-VIROLOGY-100114-055218

Eric J. Snijder, Peter J. Bredenbeek, Jessika C. Dobbe, Volker Thiel, John Ziebuhr, Leo L.M. Poon, Yi Guan, Mikhail Rozanov, Willy J.M. Spaan, Alexander E. Gorbalenya, Unique and conserved features of genome and proteome of SARS-coronavirus, an early split-off from the coronavirus group 2 lineage. Journal of Molecular Biology. ,vol. 331, pp. 991- 1004 ,(2003) , 10.1016/S0022-2836(03)00865-9

Jie Cui, Fang Li, Zheng-Li Shi, Origin and evolution of pathogenic coronaviruses Nature Reviews Microbiology. ,vol. 17, pp. 181- 192 ,(2019) , 10.1038/S41579-018-0118-9

Alvin X Han, Edyth Parker, Frits Scholer, Sebastian Maurer-Stroh, Colin A Russell, Phylogenetic Clustering by Linear Integer Programming (PhyCLIP). Molecular Biology and Evolution. ,vol. 36, pp. 1580- 1595 ,(2019) , 10.1093/MOLBEV/MSZ053

James Hadfield, Colin Megill, Sidney M Bell, John Huddleston, Barney Potter, Charlton Callender, Pavel Sagulenko, Trevor Bedford, Richard A Neher, Nextstrain: real-time tracking of pathogen evolution Bioinformatics. ,vol. 34, pp. 4121- 4123 ,(2018) , 10.1093/BIOINFORMATICS/BTY407

Wei Ji, Wei Wang, Xiaofang Zhao, Junjie Zai, Xingguang Li, Cross-species transmission of the newly identified coronavirus 2019-nCoV. Journal of Medical Virology. ,vol. 92, pp. 433- 440 ,(2020) , 10.1002/JMV.25682

Bas van der Veer, Sharon van den Brink, Lisa Wijsman, Gabriel Goderski, Jean-Louis Romette, Joanna Ellis, Maria Zambon, Malik Peiris, Herman Goossens, Chantal Reusken, Marion PG Koopmans, Christian Drosten, Victor M Corman, Olfert Landt, Marco Kaiser, Richard Molenkamp, Adam Meijer, Daniel KW Chu, Tobias Bleicker, Sebastian Brünink, Julia Schneider, Marie Luisa Schmidt, Daphne GJC Mulders, Bart L Haagmans, Detection of 2019 novel coronavirus (2019-nCoV) by real-time RT-PCR. Eurosurveillance. ,vol. 25, pp. 2000045- ,(2020) , 10.2807/1560-7917.ES.2020.25.3.2000045

Fan Wu, Su Zhao, Bin Yu, Yan-Mei Chen, Wen Wang, Zhi-Gang Song, Yi Hu, Zhao-Wu Tao, Jun-Hua Tian, Yuan-Yuan Pei, Ming-Li Yuan, Yu-Ling Zhang, Fa-Hui Dai, Yi Liu, Qi-Min Wang, Jiao-Jiao Zheng, Lin Xu, Edward C. Holmes, Yong-Zhen Zhang, A new coronavirus associated with human respiratory disease in China. Nature. ,vol. 579, pp. 265- 269 ,(2020) , 10.1038/S41586-020-2008-3

Michelle L. Holshue, Chas DeBolt, Scott Lindquist, Kathy H. Lofy, John Wiesman, Hollianne Bruce, Christopher Spitters, Keith Ericson, Sara Wilkerson, Ahmet Tural, George Diaz, Amanda Cohn, LeAnne Fox, Anita Patel, Susan I. Gerber, Lindsay Kim, Suxiang Tong, Xiaoyan Lu, Steve Lindstrom, Mark A. Pallansch, William C. Weldon, Holly M. Biggs, Timothy M. Uyeki, Satish K. Pillai, First Case of 2019 Novel Coronavirus in the United States. The New England Journal of Medicine. ,vol. 382, pp. 929- 936 ,(2020) , 10.1056/NEJMOA2001191

Roujian Lu, Xiang Zhao, Juan Li, Peihua Niu, Bo Yang, Honglong Wu, Wenling Wang, Hao Song, Baoying Huang, Na Zhu, Yuhai Bi, Xuejun Ma, Faxian Zhan, Liang Wang, Tao Hu, Hong Zhou, Zhenhong Hu, Weimin Zhou, Li Zhao, Jing Chen, Yao Meng, Ji Wang, Yang Lin, Jianying Yuan, Zhihao Xie, Jinmin Ma, William J Liu, Dayan Wang, Wenbo Xu, Edward C Holmes, George F Gao, Guizhen Wu, Weijun Chen, Weifeng Shi, Wenjie Tan, Genomic characterisation and epidemiology of 2019 novel coronavirus: implications for virus origins and receptor binding. The Lancet. ,vol. 395, pp. 565- 574 ,(2020) , 10.1016/S0140-6736(20)30251-8