An analysis of the small RNA transcriptome of four developmental stages of the citrus red mite (Panonychus citri)

作者: B. Liu , W. Dou , T-B. Ding , R. Zhong , C-Y. Liao

DOI: 10.1111/IMB.12075

关键词:

摘要: The citrus red mite (Panonychus citri) can feed on more than 112 plant species around the world. Endogenous small RNAs (sRNAs) have proved to be important components of gene regulation in many eukaryotes. Recently, sRNAs been shown involved various biological processes, such as development animals, including insects; however, date, no reported mite. Using Illumina sequencing, several categories were identified, 594 known microRNAs (miRNAs) grouped into 206 families and 31 novel miRNAs four developmental stages In addition, according bioinformatics analysis S-Poly(T) miRNA assays, expression level varied among stages. Furthermore, prediction target genes their functional annotation indicated that are multiple pathways As first report sRNA world mite, present study furthers our understanding roles played by data may help develop methods controlling pests field.

参考文章(60)
Anwesha Nag, Thomas Jack, Sculpting the flower; the role of microRNAs in flower development. Current Topics in Developmental Biology. ,vol. 91, pp. 349- 378 ,(2010) , 10.1016/S0070-2153(10)91012-0
X Chen, X Yu, Y Cai, H Zheng, D Yu, G Liu, Q Zhou, S Hu, F Hu, None, Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera. Insect Molecular Biology. ,vol. 19, pp. 799- 805 ,(2010) , 10.1111/J.1365-2583.2010.01039.X
J-Z. Niu, W. Dou, T-B. Ding, G-M. Shen, K. Zhang, G. Smagghe, J-J. Wang, Transcriptome analysis of the citrus red mite, Panonychus citri, and its gene expression by exposure to insecticide/acaricide. Insect Molecular Biology. ,vol. 21, pp. 422- 436 ,(2012) , 10.1111/J.1365-2583.2012.01148.X
Bin Liu, Gaofei Jiang, Yunfei Zhang, Junli Li, Xiaojiao Li, Jiansu Yue, Fei Chen, Haoqiang Liu, Hongjun Li, Shiping Zhu, Jinjun Wang, Chun Ran, Analysis of Transcriptome Differences between Resistant and Susceptible Strains of the Citrus Red Mite Panonychus citri (Acari: Tetranychidae) PLoS ONE. ,vol. 6, pp. e28516- ,(2011) , 10.1371/JOURNAL.PONE.0028516
Long Chen, Jane E. Dahlstrom, Sung-Hun Lee, Danny Rangasamy, Naturally occurring endo-siRNA silences LINE-1 retrotransposons in human cells through DNA methylation Epigenetics. ,vol. 7, pp. 758- 771 ,(2012) , 10.4161/EPI.20706
Andrie Koutsoulidou, Nikolaos P Mastroyiannopoulos, Denis Furling, James B Uney, Leonidas A Phylactou, Expression of miR-1, miR-133a, miR-133b and miR-206 increases during development of human skeletal muscle BMC Developmental Biology. ,vol. 11, pp. 34- 34 ,(2011) , 10.1186/1471-213X-11-34
Guru Jagadeeswaran, Yun Zheng, Niranji Sumathipala, Haobo Jiang, Estela L Arrese, Jose L Soulages, Weixiong Zhang, Ramanjulu Sunkar, Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development BMC Genomics. ,vol. 11, pp. 52- 52 ,(2010) , 10.1186/1471-2164-11-52
Zhongchen Rao, Wenyin He, Lin Liu, Sichun Zheng, Lihua Huang, Qili Feng, Identification, Expression and Target Gene Analyses of MicroRNAs in Spodoptera litura PLoS ONE. ,vol. 7, pp. e37730- ,(2012) , 10.1371/JOURNAL.PONE.0037730
Hanh T Nguyen, Manfred Frasch, MicroRNAs in muscle differentiation: lessons from Drosophila and beyond. Current Opinion in Genetics & Development. ,vol. 16, pp. 533- 539 ,(2006) , 10.1016/J.GDE.2006.08.010