Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water
作者： THORSTEN STOECK , DAVID BASS , MARKUS NEBEL , RICHARD CHRISTEN , MEREDITH D. M. JONES
DOI: 10.1111/J.1365-294X.2009.04480.X
关键词:
摘要: … Sequencing of ribosomal DNA clone libraries amplified from environmental DNA has … We suggest that current understanding of the ecological complexity of protist communities, genetic …
archives-ouvertes.fr
sci-hub.se 参考文章(58)
Andrew J. Alverson, Leanne Kolnick, INTRAGENOMIC NUCLEOTIDE POLYMORPHISM AMONG SMALL SUBUNIT (18S) RDNA PARALOGS IN THE DIATOM GENUS SKELETONEMA (BACILLARIOPHYTA) Journal of Phycology. ,vol. 41, pp. 1248- 1257 ,(2005) , 10.1111/J.1529-8817.2005.00136.X
Cédric Berney, José Fahrni, Jan Pawlowski, How many novel eukaryotic 'kingdoms'? Pitfalls and limitations of environmental DNA surveys BMC Biology. ,vol. 2, pp. 13- 13 ,(2004) , 10.1186/1741-7007-2-13
C CHANTANGSI, D LYNN, Phylogenetic relationships within the genus Tetrahymena inferred from the cytochrome c oxidase subunit 1 and the small subunit ribosomal RNA genes. Molecular Phylogenetics and Evolution. ,vol. 49, pp. 979- 987 ,(2008) , 10.1016/J.YMPEV.2008.09.017
A AMATO, W KOOISTRA, J LEVIALDIGHIRON, D MANN, T PROSCHOLD, M MONTRESOR, Reproductive Isolation among Sympatric Cryptic Species in Marine Diatoms Protist. ,vol. 158, pp. 193- 207 ,(2007) , 10.1016/J.PROTIS.2006.10.001
Thorsten Stoeck, Brett Hayward, Gordon T. Taylor, Ramon Varela, Slava S. Epstein, A Multiple PCR-primer Approach to Access the Microeukaryotic Diversity in Environmental Samples Protist. ,vol. 157, pp. 31- 43 ,(2006) , 10.1016/J.PROTIS.2005.10.004
Linda Medlin, Hille J. Elwood, Shawn Stickel, Mitchell L. Sogin, The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions. Gene. ,vol. 71, pp. 491- 499 ,(1988) , 10.1016/0378-1119(88)90066-2
Jennifer B. Hughes Martiny, Brendan J.M. Bohannan, James H. Brown, Robert K. Colwell, Jed A. Fuhrman, Jessica L. Green, M. Claire Horner-Devine, Matthew Kane, Jennifer Adams Krumins, Cheryl R. Kuske, Peter J. Morin, Shahid Naeem, Lise Øvreås, Anna-Louise Reysenbach, Val H. Smith, James T. Staley, Microbial biogeography : putting microorganisms on the map Nature Reviews Microbiology. ,vol. 4, pp. 102- 112 ,(2006) , 10.1038/NRMICRO1341
PETER D. COUNTWAY, REBECCA J. GAST, PRATIK SAVAI, DAVID A. CARON, Protistan diversity estimates based on 18S rDNA from seawater incubations in the Western North Atlantic. Journal of Eukaryotic Microbiology. ,vol. 52, pp. 95- 106 ,(2005) , 10.1111/J.1550-7408.2005.05202006.X
David Bass, Alexis T. Howe, Alexandre P. Mylnikov, Keith Vickerman, Ema E. Chao, James Edwards Smallbone, Jemma Snell, Charles Cabral Jr, Thomas Cavalier-Smith, Phylogeny and Classification of Cercomonadida (Protozoa, Cercozoa): Cercomonas, Eocercomonas, Paracercomonas, and Cavernomonas gen. nov. Protist. ,vol. 160, pp. 483- 521 ,(2009) , 10.1016/J.PROTIS.2009.01.004
Linda A. Amaral-Zettler, Elizabeth A. McCliment, Hugh W. Ducklow, Susan M. Huse, A Method for Studying Protistan Diversity Using Massively Parallel Sequencing of V9 Hypervariable Regions of Small-Subunit Ribosomal RNA Genes PLoS ONE. ,vol. 4, pp. e6372- ,(2009) , 10.1371/JOURNAL.PONE.0006372