Towards structure-based protein drug design

作者: Changsheng Zhang , Luhua Lai

DOI: 10.1042/BST0391382

关键词:

摘要: Structure-based drug design for chemical molecules has been widely used in discovery the last 30 years. Many successful applications have reported, especially field of virtual screening based on molecular docking. Recently, there much progress fragment-based as well de novo discovery. As many protein-protein interactions can be key targets design, one solutions is to protein drugs directly complexes or target structure. Compared with protein-ligand interactions, are more complicated and present challenges design. Over decade, both sampling efficiency scoring accuracy docking increased significantly. We developed several strategies structure-based A grafting strategy interaction residues successfully applied designing erythropoietin receptor-binding proteins. Similarly small-molecule we also tested protein-binder a screen binders using calculations. In comparison development believe that come age.

参考文章(40)
Brian Kuhlman, Gautam Dantas, Gregory C. Ireton, Gabriele Varani, Barry L. Stoddard, David Baker, Design of a Novel Globular Protein Fold with Atomic-Level Accuracy Science. ,vol. 302, pp. 1364- 1368 ,(2003) , 10.1126/SCIENCE.1089427
Ying Gao, Renxiao Wang, Luhua Lai, Structure-based method for analyzing protein–protein interfaces Journal of Molecular Modeling. ,vol. 10, pp. 44- 54 ,(2004) , 10.1007/S00894-003-0168-3
Andreas Bender, Robert C. Glen, A discussion of measures of enrichment in virtual screening: comparing the information content of descriptors with increasing levels of sophistication. Journal of Chemical Information and Modeling. ,vol. 45, pp. 1369- 1375 ,(2005) , 10.1021/CI0500177
Shide Liang, Zhijie Liu, Weizhong Li, Lisheng Ni, Luhua Lai, Construction of protein binding sites in scaffold structures. Biopolymers. ,vol. 54, pp. 515- 523 ,(2000) , 10.1002/1097-0282(200012)54:7<515::AID-BIP40>3.0.CO;2-0
I. D. Kuntz, Structure-based strategies for drug design and discovery. Science. ,vol. 257, pp. 1078- 1082 ,(1992) , 10.1126/SCIENCE.257.5073.1078
S. Liu, S. Liu, X. Zhu, H. Liang, A. Cao, Z. Chang, L. Lai, Nonnatural protein-protein interaction-pair design by key residues grafting. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 104, pp. 5330- 5335 ,(2007) , 10.1073/PNAS.0606198104
Arturo Casadevall, Ekaterina Dadachova, Liise-anne Pirofski, Passive antibody therapy for infectious diseases Nature Reviews Microbiology. ,vol. 2, pp. 695- 703 ,(2004) , 10.1038/NRMICRO974
E. Katchalski-Katzir, I. Shariv, M. Eisenstein, A. A. Friesem, C. Aflalo, I. A. Vakser, Molecular surface recognition: determination of geometric fit between proteins and their ligands by correlation techniques. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 89, pp. 2195- 2199 ,(1992) , 10.1073/PNAS.89.6.2195
Oranit Dror, Dina Schneidman-Duhovny, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson, Novel approach for efficient pharmacophore-based virtual screening: method and applications. Journal of Chemical Information and Modeling. ,vol. 49, pp. 2333- 2343 ,(2009) , 10.1021/CI900263D
Michaela Gebauer, Arne Skerra, Engineered protein scaffolds as next-generation antibody therapeutics Current Opinion in Chemical Biology. ,vol. 13, pp. 245- 255 ,(2009) , 10.1016/J.CBPA.2009.04.627