Usefulness of multilocus polymerase chain reaction followed by electrospray ionization mass spectrometry to identify a diverse panel of bacterial isolates.

作者: Carson D Baldwin , Gerald B Howe , Ranga Sampath , Larry B Blyn , Heather Matthews

DOI: 10.1016/J.DIAGMICROBIO.2008.12.012

关键词:

摘要: Polymerase chain reaction electrospray ionization mass spectrometry (PCR/ESI-MS) was tested for its ability to accurately identify a blinded panel of 156 diverse bacterial isolates, mostly human and/or animal pathogens. Here, 142/156 (91%) isolates were correctly identified the genus level and 115/156 (74%) species level. Only 9% misidentified. This study shows that multilocus PCR/ESI-MS has potential be useful technique identifying broad range bacteria.

参考文章(23)
Esa Kotilainen, Kaisu Rantakokko-Jalava, Erkki Eerola, Olli Meurman, Pirkko Kotilainen, Mikael Skurnik, Paavo Toivanen, Olli Ruuskanen, Simo Nikkari, Anna Alanen, Jari Jalava, Direct Amplification of rRNA Genes in Diagnosis of Bacterial Infections Journal of Clinical Microbiology. ,vol. 38, pp. 32- 39 ,(2000) , 10.1128/JCM.38.1.32-39.2000
Kathryn A. Harris, John C. Hartley, Development of broad-range 16S rDNA PCR for use in the routine diagnostic clinical microbiology service. Journal of Medical Microbiology. ,vol. 52, pp. 685- 691 ,(2003) , 10.1099/JMM.0.05213-0
Toïdi Adékambi, Pierre Berger, Didier Raoult, Michel Drancourt, rpoB gene sequence-based characterization of emerging non-tuberculous mycobacteria with descriptions of Mycobacterium bolletii sp. nov., Mycobacterium phocaicum sp. nov. and Mycobacterium aubagnense sp. nov. International Journal of Systematic and Evolutionary Microbiology. ,vol. 56, pp. 133- 143 ,(2006) , 10.1099/IJS.0.63969-0
C. Ash, J. A. E. Farrow, M. Dorsch, E. Stackebrandt, M. D. Collins, Comparative analysis of Bacillus anthracis, Bacillus cereus, and related species on the basis of reverse transcriptase sequencing of 16S rRNA. International Journal of Systematic and Evolutionary Microbiology. ,vol. 41, pp. 343- 346 ,(1991) , 10.1099/00207713-41-3-343
P. Renesto, J. Gouvernet, M. Drancourt, V. Roux, D. Raoult, Use of rpoB Gene Analysis for Detection and Identification of Bartonella Species Journal of Clinical Microbiology. ,vol. 39, pp. 430- 437 ,(2001) , 10.1128/JCM.39.2.430-437.2001
David C. Muddiman, Gordon A. Anderson, Steven A. Hofstadler, Richard D. Smith, Length and Base Composition of PCR-Amplified Nucleic Acids Using Mass Measurements from Electrospray Ionization Mass Spectrometry Analytical Chemistry. ,vol. 69, pp. 1543- 1549 ,(1997) , 10.1021/AC961134R
David J. Ecker, Rangarajan Sampath, Christian Massire, Lawrence B. Blyn, Thomas A. Hall, Mark W. Eshoo, Steven A. Hofstadler, Ibis T5000: a universal biosensor approach for microbiology Nature Reviews Microbiology. ,vol. 6, pp. 553- 558 ,(2008) , 10.1038/NRMICRO1918
M. Drancourt, A. Carlioz, D. Raoult, rpoB sequence analysis of cultured Tropheryma whippelii. Journal of Clinical Microbiology. ,vol. 39, pp. 2425- 2430 ,(2001) , 10.1128/JCM.39.7.2425-2430.2001
Steven A. Hofstadler, Rangarajan Sampath, Lawrence B. Blyn, Mark W. Eshoo, Thomas A. Hall, Yun Jiang, Jared J. Drader, James C. Hannis, Kristin A. Sannes-Lowery, Lendell L. Cummins, Brian Libby, Demetrius J. Walcott, Amy Schink, Christian Massire, Raymond Ranken, Jose Gutierrez, Sheri Manalili, Cristina Ivy, Rachael Melton, Harold Levene, Greg Barrett-Wilt, Feng Li, Vanessa Zapp, Neill White, Vivek Samant, John A. McNeil, Duane Knize, David Robbins, Karl Rudnick, Anjali Desai, Emily Moradi, David J. Ecker, TIGER: the universal biosensor International Journal of Mass Spectrometry. ,vol. 242, pp. 23- 41 ,(2005) , 10.1016/J.IJMS.2004.09.014