A benchmark for comparison of cell tracking algorithms
作者： Martin Maška , Vladimír Ulman , David Svoboda , Pavel Matula , Petr Matula
DOI: 10.1093/BIOINFORMATICS/BTU080
关键词:
摘要: … novel cell tracking accuracy measure that penalizes for all possible errors in tracking results … Cell tracking results can be represented using an acyclic oriented graph. The nodes of such …
oup.com
core.ac.uk
narcis.nl
oxfordjournals.org
stanford.edu 
researchgate.net 参考文章(31)
Alden A. Dima, John T. Elliott, James J. Filliben, Michael Halter, Adele Peskin, Javier Bernal, Marcin Kociolek, Mary C. Brady, Hai C. Tang, Anne L. Plant, Comparison of Segmentation Algorithms For Fluorescence Microscopy Images of Cells Cytometry Part A. ,vol. 79, pp. 545- 559 ,(2011) , 10.1002/CYTO.A.21079
C. Zimmer, Bo Zhang, A. Dufour, A. Thebaud, S. Berlemont, V. Meas-Yedid, J.-C.O. Marin, On the digital trail of mobile cells IEEE Signal Processing Magazine. ,vol. 23, pp. 54- 62 ,(2006) , 10.1109/MSP.2006.1628878
A Dufour, R Thibeaux, E Labruyere, N Guillen, J-C Olivo-Marin, 3-D Active Meshes: Fast Discrete Deformable Models for Cell Tracking in 3-D Time-Lapse Microscopy IEEE Transactions on Image Processing. ,vol. 20, pp. 1925- 1937 ,(2011) , 10.1109/TIP.2010.2099125
A. Dufour, V. Shinin, S. Tajbakhsh, N. Guillen-Aghion, J.-C. Olivo-Marin, C. Zimmer, Segmenting and tracking fluorescent cells in dynamic 3-D microscopy with coupled active surfaces IEEE Transactions on Image Processing. ,vol. 14, pp. 1396- 1410 ,(2005) , 10.1109/TIP.2005.852790
Fuhui Long, Hanchuan Peng, Eugene Myers, None, AUTOMATIC SEGMENTATION OF NUCLEI IN 3D MICROSCOPY IMAGES OF C.ELEGANS international symposium on biomedical imaging. pp. 536- 539 ,(2007) , 10.1109/ISBI.2007.356907
Omar Al-Kofahi, Richard J. Radke, Susan K. Goderie, Qin Shen, Sally Temple, Badrinath Roysam, Automated Cell Lineage Construction: A Rapid Method to Analyze Clonal Development Established with Murine Neural Progenitor Cells Cell Cycle. ,vol. 5, pp. 327- 335 ,(2006) , 10.4161/CC.5.3.2426
David Svoboda, Vladimír Ulman, Generation of Synthetic Image Datasets for Time-Lapse Fluorescence Microscopy Lecture Notes in Computer Science. pp. 473- 482 ,(2012) , 10.1007/978-3-642-31298-4_56
A. KAN, R. CHAKRAVORTY, J. BAILEY, C. LECKIE, J. MARKHAM, M.R. DOWLING, Automated and semi‐automated cell tracking: addressing portability challenges Journal of Microscopy. ,vol. 244, pp. 194- 213 ,(2011) , 10.1111/J.1365-2818.2011.03529.X
Gang Lin, Monica K. Chawla, Kathy Olson, John F. Guzowski, Carol A. Barnes, Badrinath Roysam, Hierarchical, model-based merging of multiple fragments for improved three-dimensional segmentation of nuclei. Cytometry Part A. ,vol. 63, pp. 20- 33 ,(2005) , 10.1002/CYTO.A.20099
N. Chenouard, I. Bloch, J. Olivo-Marin, Multiple Hypothesis Tracking for Cluttered Biological Image Sequences IEEE Transactions on Pattern Analysis and Machine Intelligence. ,vol. 35, pp. 2736- 3750 ,(2013) , 10.1109/TPAMI.2013.97