High-resolution aCGH and expression profiling identifies a novel genomic subtype of ER negative breast cancer.

Ralph H. Hruban, Manu C. Shekher, Werner Hilgers, Charles J. Yeo, Scott E. Kern, Gloria H. Su, David J. Tang, Alterations in pancreatic, biliary, and breast carcinomas support MKK4 as a genetically targeted tumor suppressor gene. Cancer Research. ,vol. 58, pp. 2339- 2342 ,(1998)

Robert Gentleman, Vincent J Carey, Wolfgang Huber, Rafael A Irizarry, Sandrine Dudoit, Bioinformatics and Computational Biology Solutions Using R and Bioconductor ,(2006)

Zhiyuan Hu, Cheng Fan, Daniel S Oh, JS Marron, Xiaping He, Bahjat F Qaqish, Chad Livasy, Lisa A Carey, Evangeline Reynolds, Lynn Dressler, Andrew Nobel, Joel Parker, Matthew G Ewend, Lynda R Sawyer, Junyuan Wu, Yudong Liu, Rita Nanda, Maria Tretiakova, Alejandra Ruiz Orrico, Donna Dreher, Juan P Palazzo, Laurent Perreard, Edward Nelson, Mary Mone, Heidi Hansen, Michael Mullins, John F Quackenbush, Matthew J Ellis, Olufunmilayo I Olopade, Philip S Bernard, Charles M Perou, The molecular portraits of breast tumors are conserved across microarray platforms BMC Genomics. ,vol. 7, pp. 96- 96 ,(2006) , 10.1186/1471-2164-7-96

G. K. Smyth, limma: Linear Models for Microarray Data Springer, New York, NY. pp. 397- 420 ,(2005) , 10.1007/0-387-29362-0_23

Hilal Özdağ, Andrew E Teschendorff, Ahmed Ashour Ahmed, Sarah J Hyland, Cherie Blenkiron, Linda Bobrow, Abhi Veerakumarasivam, Glynn Burtt, Tanya Subkhankulova, Mark J Arends, V Peter Collins, David Bowtell, Tony Kouzarides, James D Brenton, Carlos Caldas, None, Differential expression of selected histone modifier genes in human solid cancers BMC Genomics. ,vol. 7, pp. 90- 90 ,(2006) , 10.1186/1471-2164-7-90

Paul van den IJssel, Marianne Tijssen, Suet-Feung Chin, Paul Eijk, Beatriz Carvalho, Erik Hopmans, Henne Holstege, Dhinoth Kumar Bangarusamy, Jos Jonkers, Gerrit A Meijer, Carlos Caldas, Bauke Ylstra, None, Human and mouse oligonucleotide-based array CGH Nucleic Acids Research. ,vol. 33, ,(2005) , 10.1093/NAR/GNI191

Wonshik Han, Mi-Ryung Han, Jason Jongho Kang, Ji-Yeon Bae, Ji Hyun Lee, Young Ju Bae, Jeong Eon Lee, Hyuk-Jae Shin, Ki-Tae Hwang, Sung-Eun Hwang, Sung-Won Kim, Dong-Young Noh, Genomic alterations identified by array comparative genomic hybridization as prognostic markers in tamoxifen-treated estrogen receptor-positive breast cancer BMC Cancer. ,vol. 6, pp. 92- 92 ,(2006) , 10.1186/1471-2407-6-92

J. D. Storey, R. Tibshirani, Statistical significance for genomewide studies Proceedings of the National Academy of Sciences of the United States of America. ,vol. 100, pp. 9440- 9445 ,(2003) , 10.1073/PNAS.1530509100

Maria J Garcia, Jessica Pole, Suet-Feung Chin, Andrew Teschendorff, Ali Naderi, Hilal Ozdag, Maria Vias, Tanja Kranjac, Tatiana Subkhankulova, Claire Paish, Ian Ellis, James D Brenton, Paul AW Edwards, Carlos Caldas, None, A 1 Mb minimal amplicon at 8p11-12 in breast cancer identifies new candidate oncogenes. Oncogene. ,vol. 24, pp. 5235- 5245 ,(2005) , 10.1038/SJ.ONC.1208741

Simon A Gayther, Sarah J Batley, Lori Linger, Andy Bannister, Karen Thorpe, Suet-Feung Chin, Yataro Daigo, Paul Russell, Annie Wilson, Heidi M Sowter, Joy DA Delhanty, Bruce AJ Ponder, Tony Kouzarides, Carlos Caldas, None, Mutations truncating the EP300 acetylase in human cancers. Nature Genetics. ,vol. 24, pp. 300- 303 ,(2000) , 10.1038/73536