DNA Sequencing from PCR Products

作者: Giorgio Basili , Serena Bonin , Isabella Dotti

DOI: 10.1007/978-3-642-17890-0_26

关键词:

摘要: This chapter provides a procedure and some advice for direct sequencing of PCR products from DNA extracted formalin fixed paraffin embedded (FFPE) tissues. A section in detail is dedicated to the analysis electropherograms. Generally, mutational requires extraction FFPE, amplification product purification sequencing. The particularly somatic mutations tumour tissues specifying importance analyzing limited amount non-mutated component order obtain good quality analyzable

参考文章(7)
Thomas J. Lynch, Daphne W. Bell, Raffaella Sordella, Sarada Gurubhagavatula, Ross A. Okimoto, Brian W. Brannigan, Patricia L. Harris, Sara M. Haserlat, Jeffrey G. Supko, Frank G. Haluska, David N. Louis, David C. Christiani, Jeff Settleman, Daniel A. Haber, Activating mutations in the epidermal growth factor receptor underlying responsiveness of non-small-cell lung cancer to gefitinib The New England Journal of Medicine. ,vol. 350, pp. 2129- 2139 ,(2004) , 10.1056/NEJMOA040938
Cynthia Spittle, M. Renee Ward, Katherine L. Nathanson, Phyllis A. Gimotty, Eric Rappaport, Marcia S. Brose, Angelica Medina, Richard Letrero, Meenhard Herlyn, Robin H. Edwards, Application of a BRAF Pyrosequencing Assay for Mutation Detection and Copy Number Analysis in Malignant Melanoma The Journal of Molecular Diagnostics. ,vol. 9, pp. 464- 471 ,(2007) , 10.2353/JMOLDX.2007.060191
Giorgio Stanta, Stefano Pozzi Mucelli, Francesca Petrera, Serena Bonin, Gianni Bussolati, A novel fixative improves opportunities of nucleic acids and proteomic analysis in human archive's tissues. Diagnostic Molecular Pathology. ,vol. 15, pp. 115- 123 ,(2006) , 10.1097/00019606-200606000-00009
Ansgar Gerhardus, Henriette Schleberger, Brigitte Schlegelberger, Dorothea Gadzicki, Diagnostic accuracy of methods for the detection of BRCA1 and BRCA2 mutations: a systematic review. European Journal of Human Genetics. ,vol. 15, pp. 619- 627 ,(2007) , 10.1038/SJ.EJHG.5201806
Nancy Quach, Myron F Goodman, Darryl Shibata, In vitro mutation artifacts after formalin fixation and error prone translesion synthesis during PCR. BMC Clinical Pathology. ,vol. 4, pp. 1- 5 ,(2004) , 10.1186/1472-6890-4-1
J. H. J. M. van Krieken, A. Jung, T. Kirchner, F. Carneiro, R. Seruca, F. T. Bosman, P. Quirke, J. F. Fléjou, T. Plato Hansen, G. de Hertogh, P. Jares, C. Langner, G. Hoefler, M. Ligtenberg, D. Tiniakos, S. Tejpar, G. Bevilacqua, A. Ensari, KRAS mutation testing for predicting response to anti-EGFR therapy for colorectal carcinoma: proposal for an European quality assurance program Virchows Archiv. ,vol. 453, pp. 417- 431 ,(2008) , 10.1007/S00428-008-0665-Y
Mythily Srinivasan, Daniel Sedmak, Scott Jewell, Effect of fixatives and tissue processing on the content and integrity of nucleic acids. American Journal of Pathology. ,vol. 161, pp. 1961- 1971 ,(2002) , 10.1016/S0002-9440(10)64472-0