Synchronization of a budding yeast cell culture by manipulating inner cell cycle concentrations

作者: S. Wegerhoff , T. C. Neymann , S. Engell

DOI: 10.1109/CDC.2012.6426766

关键词:

摘要: The synchronization of cell populations is an important topic not only in research but also for biotechnological production processes. Synchronization means that all cells the culture are same phase cycle and they divide, at best, unison. A synchronized molecular biology to analyze events understand how control growth division. It has a high potential processes because many products which commercial interest dependent or synthesized manner. In this work strategy silico budding yeast computed analyzed. based on single model taken from literature describes Saccharomyces cerevisiae by concentrations interactions proteins participate cycle. By individually setting parameters each cell, can be used non-homogenous population. approach followed here manipulation native proteins. variation two achieved different gene expression rates leads modified cyclins appear late G 1 phase. Dependent concentration these cyclins, either lengthened shortened, thus maintaining accelerating their transition other phases. Due non-convexity problem, optimization done memetic algorithm. applied exponential growing population inside batch reactor chemostat. detailed analysis effect levels presented. For chemostat, periodic pattern synchronizing keeping synchrony computed.

参考文章(15)
T.C. Neymann, S. Wegerhoff, S. Engell, Modelling and Simulation of Budding Yeast Cultures IFAC Proceedings Volumes. ,vol. 43, pp. 461- 466 ,(2010) , 10.3182/20100707-3-BE-2012.0037
G. Charvin, F. R. Cross, E. D. Siggia, Forced periodic expression of G1 cyclins phase-locks the budding yeast cell cycle Proceedings of the National Academy of Sciences of the United States of America. ,vol. 106, pp. 6632- 6637 ,(2009) , 10.1073/PNAS.0809227106
C CIPOLLINA, M VAI, D PORRO, C HATZIS, Towards understanding of the complex structure of growing yeast populations. Journal of Biotechnology. ,vol. 128, pp. 393- 402 ,(2007) , 10.1016/J.JBIOTEC.2006.10.012
T.C. Neymann, S. Wegerhoff, S. Engell, Synchronization of Budding Yeast Cultures IFAC Proceedings Volumes. ,vol. 44, pp. 8384- 8390 ,(2011) , 10.3182/20110828-6-IT-1002.01712
A. Goldbeter, D. E. Koshland, An amplified sensitivity arising from covalent modification in biological systems Proceedings of the National Academy of Sciences of the United States of America. ,vol. 78, pp. 6840- 6844 ,(1981) , 10.1073/PNAS.78.11.6840
Renata Zadrag-Tecza, Magdalena Kwolek-Mirek, Grzegorz Bartosz, Tomasz Bilinski, Cell volume as a factor limiting the replicative lifespan of the yeast Saccharomyces cerevisiae. Biogerontology. ,vol. 10, pp. 481- 488 ,(2009) , 10.1007/S10522-008-9192-0
Dorjsuren Battogtokh, Kazuyuki Aihara, John J. Tyson, Synchronization of eukaryotic cells by periodic forcing. Physical Review Letters. ,vol. 96, pp. 148102- ,(2006) , 10.1103/PHYSREVLETT.96.148102
Frederick R. Cross, Eric D. Siggia, Mode locking the cell cycle. Physical Review E. ,vol. 72, pp. 021910- ,(2005) , 10.1103/PHYSREVE.72.021910
N Grandin, S I Reed, Differential function and expression of Saccharomyces cerevisiae B-type cyclins in mitosis and meiosis. Molecular and Cellular Biology. ,vol. 13, pp. 2113- 2125 ,(1993) , 10.1128/MCB.13.4.2113