Parameters of in vitroEvolution of Proteins and Peptides

作者: V. P. Valuev , D. A. Afonnikov , O. I. Petrenko , D. A. Grigorovich

DOI: 10.1023/A:1013298604739

关键词:

摘要: In vitroevolution is used to study protein sequences, structures, and interactions obtain proteins with new properties. To analyze the specific features of this process in phage display experiments, we studied amino acid composition selected constructed a matrix substitutions, identified pairs coadaptive substitutions. The frequency proved be tightly associated number corresponding codons; numerous correlated substitutions were found.

参考文章(22)
Sergey Zozulya, Mario Lioubin, Ronald J. Hill, Clare Abram, Mikhail L. Gishizky, Mapping signal transduction pathways by phage display Nature Biotechnology. ,vol. 17, pp. 1193- 1198 ,(1999) , 10.1038/70736
Nick Wrighton, David Gearing, Fashioning FGFs from phage? Nature Biotechnology. ,vol. 17, pp. 1157- 1158 ,(1999) , 10.1038/70696
George P. Smith, Jamie K. Scott, Libraries of peptides and proteins displayed on filamentous phage Methods in Enzymology. ,vol. 217, pp. 228- 257 ,(1993) , 10.1016/0076-6879(93)17065-D
Naoyuki Takahata, Neutral theory of molecular evolution Current Opinion in Genetics & Development. ,vol. 6, pp. 767- 772 ,(1996) , 10.1016/S0959-437X(96)80034-7
D. Matthews, J. Wells, Substrate phage: selection of protease substrates by monovalent phage display. Science. ,vol. 260, pp. 1113- 1117 ,(1993) , 10.1126/SCIENCE.8493554
N. C. Wrighton, F. X. Farrell, R. Chang, A. K. Kashyap, F. P. Barbone, L. S. Mulcahy, D. L. Johnson, R. W. Barrett, L. K. Jolliffe, W. J. Dower, Small Peptides as Potent Mimetics of the Protein Hormone Erythropoietin Science. ,vol. 273, pp. 458- 463 ,(1996) , 10.1126/SCIENCE.273.5274.458
P.K. Ponnuswamy, M. Prabhakaran, P. Manavalan, Hydrophobic packing and spatial arrangement of amino acid residues in globular proteins. Biochimica et Biophysica Acta. ,vol. 623, pp. 301- 316 ,(1980) , 10.1016/0005-2795(80)90258-5
S. Kawashima, H. Ogata, M. Kanehisa, AAindex: Amino Acid Index Database Nucleic Acids Research. ,vol. 27, pp. 368- 369 ,(1999) , 10.1093/NAR/27.1.368
Mikael Widersten, Bengt Mannervik, Glutathione Transferases with Novel Active Sites Isolated by Phage Display from a Library of Random Mutants Journal of Molecular Biology. ,vol. 250, pp. 115- 122 ,(1995) , 10.1006/JMBI.1995.0362
D. Eisenberg, E. Schwarz, M. Komaromy, R. Wall, Analysis of membrane and surface protein sequences with the hydrophobic moment plot. Journal of Molecular Biology. ,vol. 179, pp. 125- 142 ,(1984) , 10.1016/0022-2836(84)90309-7