Emergence of novel Norovirus recombinants with NVGII.1/NVGII.5 RdRp gene and NVGII.13 capsid gene among children and adults in Kolkata, India.
作者： Krishnan T , Nataraju Sm , Bhattacharya Mk , Kobayashi N , Pativada Ms
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摘要: Norovirus (NoV) is a leading cause of non bacterial acute gastroenteritis in human beings. Molecular characterization NoVs following continuous, stringent surveillance had earlier shown that novel strains representing an intergenogroup as well GII NoV intergenotype recombinants were circulation among watery diarrhoea cases Kolkata, India. The present study documents two recombinant (Hu/NoV/ IDH1501/2009/IND and Hu/NoV/IDH1873/2009/IND) along with other interesting strains. Similarity plot phylogenetic analysis confirmed the strain Hu/NoV/IDH1501/2009/IND genes for RNA dependent polymerase (RdRp) GII.1-like capsid GII.13-like; Hu/NoV/IDH1873/2009/IND was its RdRp gene GII.5-like being GII.13-like. Clinical symptoms chiefly associated infection varying duration diarrohea vomiting some dehydration.
参考文章(32)
Julie D. Thompson, Desmond G. Higgins, Toby J. Gibson, CLUSTAL W: IMPROVING THE SENSITIVITY OF PROGRESSIVE MULTIPLE SEQUENCE ALIGNMENT THROUGH SEQUENCE WEIGHTING, POSITION-SPECIFIC GAP PENALTIES AND WEIGHT MATRIX CHOICE Nucleic Acids Research. ,vol. 22, pp. 4673- 4680 ,(1994) , 10.1093/NAR/22.22.4673
K. Ambert-Balay, F. Bon, F. Le Guyader, P. Pothier, E. Kohli, Characterization of New Recombinant Noroviruses Journal of Clinical Microbiology. ,vol. 43, pp. 5179- 5186 ,(2005) , 10.1128/JCM.43.10.5179-5186.2005
T. Kageyama, M. Shinohara, K. Uchida, S. Fukushi, F. B. Hoshino, S. Kojima, R. Takai, T. Oka, N. Takeda, K. Katayama, Coexistence of Multiple Genotypes, Including Newly Identified Genotypes, in Outbreaks of Gastroenteritis Due to Norovirus in Japan Journal of Clinical Microbiology. ,vol. 42, pp. 2988- 2995 ,(2004) , 10.1128/JCM.42.7.2988-2995.2004
K. Tamura, J. Dudley, M. Nei, S. Kumar, MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0 Molecular Biology and Evolution. ,vol. 24, pp. 1596- 1599 ,(2007) , 10.1093/MOLBEV/MSM092
Shigeyuki Kojima, Tsutomu Kageyama, Shuetsu Fukushi, Fuminori B. Hoshino, Michiyo Shinohara, Kazue Uchida, Katsuro Natori, Naokazu Takeda, Kazuhiko Katayama, Genogroup-specific PCR primers for detection of Norwalk-like viruses. Journal of Virological Methods. ,vol. 100, pp. 107- 114 ,(2002) , 10.1016/S0166-0934(01)00404-9
Rowena A. Bull, Grant S. Hansman, Leighton E. Clancy, Mark M. Tanaka, William D. Rawlinson, Peter A. White, Norovirus recombination in ORF1/ORF2 overlap. Emerging Infectious Diseases. ,vol. 11, pp. 1079- 1085 ,(2005) , 10.3201/EID1107.041273
Du-Ping Zheng, Tamie Ando, Rebecca L. Fankhauser, R. Suzanne Beard, Roger I. Glass, Stephan S. Monroe, Norovirus classification and proposed strain nomenclature Virology. ,vol. 346, pp. 312- 323 ,(2006) , 10.1016/J.VIROL.2005.11.015
T. Tsugawa, K. Numata-Kinoshita, S. Honma, S. Nakata, M. Tatsumi, Y. Sakai, K. Natori, N. Takeda, S. Kobayashi, H. Tsutsumi, Virological, Serological, and Clinical Features of an Outbreak of Acute Gastroenteritis Due to Recombinant Genogroup II Norovirus in an Infant Home Journal of Clinical Microbiology. ,vol. 44, pp. 177- 182 ,(2006) , 10.1128/JCM.44.1.177-182.2006
G REUTER, H VENNEMA, M KOOPMANS, G SZUCS, Epidemic spread of recombinant noroviruses with four capsid types in Hungary. Journal of Clinical Virology. ,vol. 35, pp. 84- 88 ,(2006) , 10.1016/J.JCV.2005.07.012
Kavita S. Lole, Robert C. Bollinger, Ramesh S. Paranjape, Deepak Gadkari, Smita S. Kulkarni, Nicole G. Novak, Roxann Ingersoll, Haynes W. Sheppard, Stuart C. Ray, Full-Length Human Immunodeficiency Virus Type 1 Genomes from Subtype C-Infected Seroconverters in India, with Evidence of Intersubtype Recombination Journal of Virology. ,vol. 73, pp. 152- 160 ,(1999) , 10.1128/JVI.73.1.152-160.1999