The complete mitochondrial genome of the marbled rockfish Sebastiscus marmoratus (Scorpaeniformes, Scorpaenidae): Genome characterization and phylogenetic considerations
作者： Tian-Jun Xu , Yuan-Zhi Cheng , Xue-Zhu Liu , Ge Shi , Ri-Xin Wang
DOI: 10.1134/S0026893311020191
关键词:
摘要: The complete mitochondrial genome sequence of the marbled rockfish Sebastiscus marmoratus (Scorpaeniformes, Scorpaenidae) was determined and phylogenetic analysis conducted to elucidate evolutionary relationship with other Sebastinae species. This genome, consisting 17301 bp, is highly similar that most vertebrates, containing same gene order an identical number genes or regions, including 13 protein-coding genes, two ribosomal RNAs, 22 transfer one putative control region. Most are encoded on H-strand, while ND6 seven tRNA (for Gln, Ala, Asn, Tyr, Ser (UCA), Glu, Pro) L-strand. reading frame pairs overlapped strand (the ATPase 8 6 by ten nucleotides; ND4L ND4 nucleotides). possibly nonfunctional light-strand replication origin folded into a typical stem-loop secondary structure conserved motif (5′-GCCGG-3′) found at base stem within tRNACys gene. An extent termination-associated (ETAS) blocks (CSB) were identified in region, except for CSB-1; unusual long tandem repeats 3′ end Phylogenetic analyses supported view comprises four genera (Sebastes, Hozukius, Helicolenus, Sebastiscus).
springer.com
sci-hub.se 参考文章(50)
Il-Chan Kim, Jae-Seong Lee, The complete mitochondrial genome of the rockfish Sebastes schlegeli (Scorpaeniformes, Scorpaenidae). Molecules and Cells. ,vol. 17, pp. 322- 328 ,(2004)
T. Setoguma, J. Kita, S. Tsuchida, Temperature preference and tolerance, and oxygen consumption of the marbled rockfish, Sebastiscus marmoratus Marine Biology. ,vol. 125, pp. 467- 471 ,(1996) , 10.1007/BF00353259
D A Clayton, J E Hixson, T W Wong, Both the conserved stem-loop and divergent 5'-flanking sequences are required for initiation at the human mitochondrial origin of light-strand DNA replication. Journal of Biological Chemistry. ,vol. 261, pp. 2384- 2390 ,(1986) , 10.1016/S0021-9258(17)35948-3
John Maddox, Polite row about models in biology. Nature. ,vol. 373, pp. 555- 555 ,(1995) , 10.1038/373555A0
Richard E. Broughton, Jami E. Milam, Bruce A. Roe, The Complete Sequence of the Zebrafish (Danio rerio) Mitochondrial Genome and Evolutionary Patterns in Vertebrate Mitochondrial DNA Genome Research. ,vol. 11, pp. 1958- 1967 ,(2001) , 10.1101/GR.156801
E Arnason, D M Rand, Heteroplasmy of short tandem repeats in mitochondrial DNA of Atlantic cod, Gadus morhua. Genetics. ,vol. 132, pp. 211- 220 ,(1992) , 10.1093/GENETICS/132.1.211
Takashi Ohtsuki, Gota Kawai, Kimitsuna Watanabe, The minimal tRNA: unique structure of Ascaris suum mitochondrial tRNASerUCU having a short T arm and lacking the entire D arm FEBS Letters. ,vol. 514, pp. 37- 43 ,(2002) , 10.1016/S0014-5793(02)02328-1
Peng Zhang, Yue-Qin Chen, Yi-Fei Liu, Hui Zhou, Liang-Hu Qu, The complete mitochondrial genome of the Chinese giant salamander, Andrias davidianus (Amphibia: Caudata) Gene. ,vol. 311, pp. 93- 98 ,(2003) , 10.1016/S0378-1119(03)00560-2
T XU, S CHEN, X JI, Y TIAN, MHC polymorphism and disease resistance to Vibrio anguillarum in 12 selective Japanese flounder (Paralichthys olivaceus) families. Fish & Shellfish Immunology. ,vol. 25, pp. 213- 221 ,(2008) , 10.1016/J.FSI.2008.05.007
Nguan Soon Tan, Vladimir Frecer, Toong Jin Lam, Jeak Ling Ding, Temperature dependence of estrogen binding: importance of a subzone in the ligand binding domain of a novel piscine estrogen receptor. Biochimica et Biophysica Acta. ,vol. 1452, pp. 103- 120 ,(1999) , 10.1016/S0167-4889(99)00128-7