Genome-wide in situ exon capture for selective resequencing

作者: Emily Hodges , Zhenyu Xuan , Vivekanand Balija , Melissa Kramer , Michael N Molla

DOI: 10.1038/NG.2007.42

关键词:

摘要: … exon regions with at least one associated read, and (ii) at the base pair level, by the number of base pairs in all exon regions … with the specific target exon regions out of the total number …

参考文章(17)
Eric J Topol, Kelly A Frazer, The resequencing imperative Nature Genetics. ,vol. 39, pp. 439- 440 ,(2007) , 10.1038/NG0407-439
Artem Barski, Suresh Cuddapah, Kairong Cui, Tae-Young Roh, Dustin E. Schones, Zhibin Wang, Gang Wei, Iouri Chepelev, Keji Zhao, High-resolution profiling of histone methylations in the human genome. Cell. ,vol. 129, pp. 823- 837 ,(2007) , 10.1016/J.CELL.2007.05.009
Christopher Greenman, Philip Stephens, Raffaella Smith, Gillian L. Dalgliesh, Christopher Hunter, Graham Bignell, Helen Davies, Jon Teague, Adam Butler, Claire Stevens, Sarah Edkins, Sarah O’Meara, Imre Vastrik, Esther E. Schmidt, Tim Avis, Syd Barthorpe, Gurpreet Bhamra, Gemma Buck, Bhudipa Choudhury, Jody Clements, Jennifer Cole, Ed Dicks, Simon Forbes, Kris Gray, Kelly Halliday, Rachel Harrison, Katy Hills, Jon Hinton, Andy Jenkinson, David Jones, Andy Menzies, Tatiana Mironenko, Janet Perry, Keiran Raine, Dave Richardson, Rebecca Shepherd, Alexandra Small, Calli Tofts, Jennifer Varian, Tony Webb, Sofie West, Sara Widaa, Andy Yates, Daniel P. Cahill, David N. Louis, Peter Goldstraw, Andrew G. Nicholson, Francis Brasseur, Leendert Looijenga, Barbara L. Weber, Yoke-Eng Chiew, Anna deFazio, Mel F. Greaves, Anthony R. Green, Peter Campbell, Ewan Birney, Douglas F. Easton, Georgia Chenevix-Trench, Min-Han Tan, Sok Kean Khoo, Bin Tean Teh, Siu Tsan Yuen, Suet Yi Leung, Richard Wooster, P. Andrew Futreal, Michael R. Stratton, Patterns of somatic mutation in human cancer genomes Nature. ,vol. 446, pp. 153- 158 ,(2007) , 10.1038/NATURE05610
Gordon Robertson, Martin Hirst, Matthew Bainbridge, Misha Bilenky, Yongjun Zhao, Thomas Zeng, Ghia Euskirchen, Bridget Bernier, Richard Varhol, Allen Delaney, Nina Thiessen, Obi L Griffith, Ann He, Marco Marra, Michael Snyder, Steven Jones, Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing Nature Methods. ,vol. 4, pp. 651- 657 ,(2007) , 10.1038/NMETH1068
P.A. FUTREAL, R. WOOSTER, M.R. STRATTON, Somatic Mutations in Human Cancer: Insights from Resequencing the Protein Kinase Gene Family Cold Spring Harbor Symposia on Quantitative Biology. ,vol. 70, pp. 43- 49 ,(2005) , 10.1101/SQB.2005.70.015
David R Bentley, Whole-genome re-sequencing. Current Opinion in Genetics & Development. ,vol. 16, pp. 545- 552 ,(2006) , 10.1016/J.GDE.2006.10.009
K. D. Pruitt, T. Tatusova, D. R. Maglott, NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins Nucleic Acids Research. ,vol. 33, pp. 501- 504 ,(2004) , 10.1093/NAR/GKL842
Bing Ren, François Robert, John J Wyrick, Oscar Aparicio, Ezra G Jennings, Itamar Simon, Julia Zeitlinger, Jorg Schreiber, Nancy Hannett, Elenita Kanin, Thomas L Volkert, Christopher J Wilson, Stephen P Bell, Richard A Young, Genome-Wide Location and Function of DNA Binding Proteins Science. ,vol. 290, pp. 2306- 2309 ,(2000) , 10.1126/SCIENCE.290.5500.2306
T. Sjoblom, S. Jones, L. D. Wood, D. W. Parsons, J. Lin, T. D. Barber, D. Mandelker, R. J. Leary, J. Ptak, N. Silliman, S. Szabo, P. Buckhaults, C. Farrell, P. Meeh, S. D. Markowitz, J. Willis, D. Dawson, J. K. V. Willson, A. F. Gazdar, J. Hartigan, L. Wu, C. Liu, G. Parmigiani, B. H. Park, K. E. Bachman, N. Papadopoulos, B. Vogelstein, K. W. Kinzler, V. E. Velculescu, Consensus coding sequences of human breast and colorectal cancers Science. ,vol. 314, pp. 268- 274 ,(2007) , 10.1126/SCIENCE.1133427
Kevin L Gunderson, Frank J Steemers, Grace Lee, Leo G Mendoza, Mark S Chee, A genome-wide scalable SNP genotyping assay using microarray technology Nature Genetics. ,vol. 37, pp. 549- 554 ,(2005) , 10.1038/NG1547