Recent amplification and impact of MITEs on the genome of grapevine (Vitis vinifera L.)
作者： Andrej Benjak , Stéphanie Boué , Astrid Forneck , Josep M. Casacuberta
DOI: 10.1093/GBE/EVP009
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摘要: Miniature inverted-repeat transposable elements (MITEs) are a particular type of defective class II transposons present in genomes as highly homogeneous populations small elements. Their high copy number and close association to genes make their potential impact on gene evolution particularly relevant. Here, we detailed analysis the MITE families directly related grapevine “cut-and-paste” transposons. Our results show that MITEs have transduplicated amplified genomic sequences, including sequences fragments other mobile also although some were already ancestor European American Vitis wild species, they been actively transposing accompanying domestication breeding. We abundant them frequently inserted within untranslated regions genes. insertions polymorphic among cultivars, which generate transcript variability. The data presented here greatly contributed genetic diversity has used for
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David Lepetit, Stéphanie Pasquet, Michelle Olive, Nadine Thézé, Pierre Thiébaud, Glider and Vision: two new families of miniature inverted-repeat transposable elements in Xenopus laevis genome. Genetica. ,vol. 108, pp. 163- 169 ,(2000) , 10.1023/A:1004173315419
Astrid Forneck, Plant Breeding: Clonality — A Concept for Stability and Variability During Vegetative Propagation Springer, Berlin, Heidelberg. pp. 164- 183 ,(2005) , 10.1007/3-540-27043-4_8
Steve Rozen, Helen Skaletsky, Primer3 on the WWW for general users and for biologist programmers. Methods of Molecular Biology. ,vol. 132, pp. 365- 386 ,(2000) , 10.1385/1-59259-192-2:365
Burkhard Büdel, Wolfram Beyschlag, Dennis Francis, Ulrich Lüttge, Progress in Botany ,(2011)
J.M. Deragon, J.M. Casacuberta, O. Panaud, Plant transposable elements. Genome dynamics. ,vol. 4, pp. 69- 82 ,(2012) , 10.1159/000126007
John V Moran, Ralph J DeBerardinis, Haig H Kazazian Jr, Exon Shuffling by L1 Retrotransposition Science. ,vol. 283, pp. 1530- 1534 ,(1999) , 10.1126/SCIENCE.283.5407.1530
Michele Morgante, Stephan Brunner, Giorgio Pea, Kevin Fengler, Andrea Zuccolo, Antoni Rafalski, Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize Nature Genetics. ,vol. 37, pp. 997- 1002 ,(2005) , 10.1038/NG1615
Santiago Moreno-Vázquez, Jianchang Ning, Blake C. Meyers, hATpin, a family of MITE-like hAT mobile elements conserved in diverse plant species that forms highly stable secondary structures. Plant Molecular Biology. ,vol. 58, pp. 869- 886 ,(2005) , 10.1007/S11103-005-8271-8
Olivier Jaillon, Jean-Marc Aury, Benjamin Noel, Alberto Policriti, Christian Clepet, Alberto Casagrande, Nathalie Choisne, Sébastien Aubourg, Nicola Vitulo, Claire Jubin, Alessandro Vezzi, Fabrice Legeai, Philippe Hugueney, Corinne Dasilva, David Horner, Erica Mica, Delphine Jublot, Julie Poulain, Clémence Bruyère, Alain Billault, Béatrice Segurens, Michel Gouyvenoux, Edgardo Ugarte, Federica Cattonaro, Véronique Anthouard, Virginie Vico, Cristian Del Fabbro, Michaël Alaux, Gabriele Di Gaspero, Vincent Dumas, Nicoletta Felice, Sophie Paillard, Irena Juman, Marco Moroldo, Simone Scalabrin, Aurélie Canaguier, Isabelle Le Clainche, Giorgio Malacrida, Eléonore Durand, Graziano Pesole, Valérie Laucou, Philippe Chatelet, Didier Merdinoglu, Massimo Delledonne, Mario Pezzotti, Alain Lecharny, Claude Scarpelli, François Artiguenave, M Enrico Pè, Giorgio Valle, Michele Morgante, Michel Caboche, Anne-Françoise Adam-Blondon, Jean Weissenbach, Francis Quétier, Patrick Wincker, The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature. ,vol. 449, pp. 463- 467 ,(2007) , 10.1038/NATURE06148
Hadi Quesneville, Danielle Nouaud, Dominique Anxolabéhère, P elements and MITE relatives in the whole genome sequence of Anopheles gambiae BMC Genomics. ,vol. 7, pp. 214- 214 ,(2006) , 10.1186/1471-2164-7-214