A Regression-Based Analysis of Ribosome-Profiling Data Reveals a Conserved Complexity to Mammalian Translation

Alexander P. Fields , Edwin H. Rodriguez , Marko Jovanovic , Noam Stern-Ginossar
Molecular Cell 60 ( 5) 816 -827

188
2015
Ten things to know about oomycete effectors

Sebastian Schornack , Edgar Huitema , Liliana M Cano , Tolga O Bozkurt
Molecular Plant Pathology 10 ( 6) 795 -803

219
2009
Loggerhead sea turtle embryos (Caretta caretta) regulate expression of stress-response and

BLAIR P BENTLEY , BRIAN J HAAS , JAMIE N TEDESCHI , OLIVER BERRY

Genome sequence of Babesia bovis and comparative analysis of apicomplexan hemoprotozoa.

Kelly A Brayton , Audrey O. T Lau , David R Herndon , Linda Hannick
PLOS Pathogens 3 ( 10) 1401 -1413

301
2007
Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

Brian J Haas , Steven L Salzberg , Wei Zhu , Mihaela Pertea
Genome Biology 9 ( 1) 1 -22

1,056
2008
Comparative genomics of mutualistic viruses of Glyptapanteles parasitic wasps.

Christopher A Desjardins , Dawn E Gundersen-Rindal , Jessica B Hostetler , Luke J Tallon
Genome Biology 9 ( 12) 1 -17

87
2008
'Next-generation' sequencing becomes 'now-generation'

Daniel E Neafsey , Brian J Haas
Genome Biology 12 ( 3) 303 -303

5
2011
Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes

Georgia Giannoukos , Dawn M Ciulla , Katherine Huang , Brian J Haas
Genome Biology 13 ( 3) 1 -13

251
2012
Draft genome sequence of the oilseed species Ricinus communis

Agnes P Chan , Jonathan Crabtree , Qi Zhao , Hernan Lorenzi
Nature Biotechnology 28 ( 9) 951 -956

549
2010
Full-length transcriptome assembly from RNA-Seq data without a reference genome.

Manfred G Grabherr , Brian J Haas , Moran Yassour , Joshua Z Levin
Nature Biotechnology 29 ( 7) 644 -652

14,872
2011
A clustering method for repeat analysis in DNA sequences

Natalia Volfovsky , Brian J Haas , Steven L Salzberg
Genome Biology 2 ( 8) 1 -11

124
2001
Structure and evolution of a proviral locus of Glyptapanteles indiensis bracovirus

Christopher A Desjardins , Dawn E Gundersen-Rindal , Jessica B Hostetler , Luke J Tallon
BMC Microbiology 7 ( 1) 61 -61

40
2007
Characterization of paralogous protein families in rice

Haining Lin , Shu Ouyang , Amy Egan , Kan Nobuta
BMC Plant Biology 8 ( 1) 18 -18

61
2008
How deep is deep enough for RNA-Seq profiling of bacterial transcriptomes?

Brian J Haas , Melissa Chin , Chad Nusbaum , Bruce W Birren
BMC Genomics 13 ( 1) 734 -734

175
2012
Advancing RNA-Seq analysis

Brian J Haas , Michael C Zody
Nature Biotechnology 28 ( 5) 421 -423

312
2010
Complete reannotation of the Arabidopsis genome: methods, tools, protocols and the final release

Brian J Haas , Jennifer R Wortman , Catherine M Ronning , Linda I Hannick
BMC Biology 3 ( 1) 7 -7

143
2005
A universal genomic coordinate translator for comparative genomics

Neda Zamani , Görel Sundström , Jennifer RS Meadows , Marc P Höppner
BMC Bioinformatics 15 ( 1) 227 -227

5
2014
Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis

Matthew A Campbell , Brian J Haas , John P Hamilton , Stephen M Mount
BMC Genomics 7 ( 1) 327 -327

391
2006
Sequencing Medicago truncatula expressed sequenced tags using 454 Life Sciences technology.

Foo Cheung , Brian J Haas , Susanne MD Goldberg , Gregory D May
BMC Genomics 7 ( 1) 272 -272

219
2006