Luke R. Thompson
机构: Associate Research Professor, NOAA Northern Gulf Institute
主页: github.com
每年引用次数
引用次数
引用: 26,150
H-指数: 32
I10-指数 : 45
出版物: 94
Metagenomic covariation along densely sampled environmental gradients in the Red Sea
Luke R Thompson , Gareth J Williams , Mohamed F Haroon , Ahmed Shibl
The ISME Journal 11 138 -151
48
2016
Expanding the temporal and spatial scales of environmental DNA research with autonomous sampling
Nathan K Truelove , Nastassia V Patin , Markus Min , Kathleen J Pitz
Environmental DNA 4 ( 4) 972 -984
28
2022
Subsurface automated samplers for eDNA (SASe) for biological monitoring and research
Nathan Formel , Ian C Enochs , Chris Sinigalliano , Sean R Anderson
HardwareX 10 e00239 -e00239
21
2021
Bio-GO-SHIP: the time is right to establish global repeat sections of ocean biology
Sophie Clayton , Harriet Alexander , Jason R Graff , Nicole J Poulton
Frontiers in Marine Science 8 767443 -767443
13
2022
Lake Erie field trials to advance autonomous monitoring of cyanobacterial harmful algal blooms
Paul A Den Uyl , Luke R Thompson , Reagan M Errera , James M Birch
Frontiers in Marine Science 9 1021952 -1021952
11
2022
Message in a bottle: Archived DNA reveals marine heatwave-associated shifts in fish assemblages
Zachary Gold , Ryan P Kelly , Andrew Olaf Shelton , Andrew R Thompson
biorxiv 2022.07. 27.501788 -2022.07. 27.501788
9
2022
Optimizing an enclosed bead beating extraction method for microbial and fish environmental DNA
Sean R Anderson , Luke R Thompson
Environmental DNA 4 ( 2) 291 -303
8
2022
Tourmaline: A containerized workflow for rapid and iterable amplicon sequence analysis using QIIME 2 and Snakemake
Luke R Thompson , Sean R Anderson , Paul A Den Uyl , Nastassia V Patin
GigaScience 11 giac066 -giac066
6
2022
Decoding dissolved information: environmental DNA sequencing at global scale to monitor a changing ocean
Luke R Thompson , Peter Thielen
Current Opinion in Biotechnology 81 102936 -102936
4
2023
MIxS-SA: a MIxS extension defining the minimum information standard for sequence data from symbiont-associated micro-organisms
Fátima Jorge , Jaelle C Brealey , Paul J Brindley , Marie Buysse
Isme communications 2 ( 1) 9 -9
4
2022
Dominance of Sulfurospirillum in metagenomes associated with the methane ice worm (Sirsoe methanicola)
Shen Jean Lim , Luke R Thompson , Craig M Young , Terry Gaasterland
Applied and environmental microbiology 88 ( 15) e00290 -22
4
2022
Kenneth J 424 Locey, Robert J Prill, Anupriya Tripathi, Sean M Gibbons, Gail Ackermann, et al. A communal 425 catalogue reveals earth’s multiscale microbial diversity
Luke R Thompson , Jon G Sanders , Daniel McDonald , Amnon Amir
Nature 551 ( 7681) 457 -463
3
2017
Investigation of machine learning algorithms for taxonomic classification of marine metagenomes
Helen Park , Shen Jean Lim , Jonathan Cosme , Kyle O'Connell
Microbiology Spectrum 11 ( 5) e05237 -22
1
2023
Genetic features of the marine polychaete Sirsoe methanicola from metagenomic data
Shen Jean Lim , Luke R Thompson , Kelly D Goodwin
Frontiers in Marine Science 9 1067482 -1067482
2023
Red Sea metagenomes
Mohamed Haroon , Luke R Thompson , Ulrich Stingl
NCBI
2016
Red Sea Prochlorococcus Assembly
Ahmed A Shibl , Mohamed Haroon , David Ngugi , Luke R Thompson
NCBI
2015
Electron cryo-tomography of Prochlorococcus shows cytoplasmic and periplasmic structural features
Michael P Marsh , Angela C Cruciano , Luke R Thompson , Sallie W Chisholm
BIOPHYSICAL JOURNAL 504A -505A
2007
Introduction to Metadata and Ontologies: Everything You Always Wanted to Know About Metadata and Ontologies (But Were Afraid to Ask)
Pajau Vangay , Elisha Wood-Charlson , Ruth Timme , Danielle Christianson
2020
Using MIxS: An Implementation Report from Two Metagenomic Information Systems
Joel Sachs , Luke Thompson , Nazir El-Kayssi , Satpal Bilkhu
Biodiversity Information Science and Standards 1
2017
Exploring the Vast Diversity of Marine Viruses
Mya Breitbart , Luke Thompson , Curtis Suttle , Matthew Sullivan
Oceanography 20 ( 2) 135 -139
165
2007
Rob Knight James T. Morton Zhenjiang Zech Xu Sallie W Chisholm Daniel McDonald Ulrich Stingl Antonio González Kelly D. Goodwin Anupriya Tripathi J Gregory Caporaso Jack A Gilbert Matthew B Sullivan Embriette Hyde Evguenia Kopylova Jose A Navas-Molina Debbie Lindell David Kamanda Ngugi M. Fauzi Haroon Libusha Kelly Ahmed A. Shibl