Weak carbohydrate-carbohydrate interactions in membrane adhesion are fuzzy and generic.
Batuhan Kav , Andrea Grafmüller , Emanuel Schneck , Thomas R. Weikl
Nanoscale 12 ( 33) 17342 -17353
2020
Different Force Fields Give Rise to Different Amyloid Aggregation Pathways in Molecular Dynamics Simulations.
Suman Samantray , Feng Yin , Batuhan Kav , Birgit Strodel
Journal of Chemical Information and Modeling 60 ( 12) 6462 -6475
7
2020
Function changing mutations in glucocorticoid receptor evolution correlate with their relevance to mode coupling
Batuhan Kav , Murat Öztürk , Alkan Kabakçιoğlu
Proteins: Structure, Function, and Bioinformatics 84 ( 5) 655 -665
3
2016
Binding and segregation of proteins in membrane adhesion: theory, modeling, and simulations
Thomas R. Weikl , Jinglei Hu , Batuhan Kav , Bartosz Różycki
arXiv: Subcellular Processes 30 159 -194
2
2019
Force generation by the growth of amyloid aggregates
Therese W. Herling , Gonzalo A. Garcia , Thomas C. T. Michaels , Wolfgang Grentz
Proceedings of the National Academy of Sciences of the United States of America 112 ( 31) 9524 -9529
16
2015
Headgroup Structure and Cation Binding in Phosphatidylserine Lipid Bilayers
Hanne Antila , Pavel Buslaev , Fernando Favela-Rosales , Tiago M. Ferreira
Journal of Physical Chemistry B 123 ( 43) 9066 -9079
13
2019
Probing the link between pancratistatin and mitochondrial apoptosis through changes in the membrane dynamics on the nanoscale
Stuart R Castillo , Brett W Rickeard , Mitchell DiPasquale , Michael HL Nguyen
Molecular Pharmaceutics 19 ( 6) 1839 -1852
2022
Overlay databank unlocks data-driven analyses of biomolecules for all
Anne M Kiirikki , Hanne S Antila , Lara S Bort , Pavel Buslaev
Nature Communications 15 ( 1) 1136 -1136
7
2024
SUPPORTING INFORMATION: Headgroup Structure and Cation Binding in Phosphatidylserine Lipid Bilayers
Hanne Antila , Pavel Buslaev , Fernando Favela-Rosales , Tiago M Ferreira
NMRlipids Databank makes data-driven analysis of biomembrane properties accessible for all
Samuli Ollila , Anne Kiirikki , Hanne Antila , Lara Bort
5
2023
Emerging era of biomolecular membrane simulations: automated physically-justified force field development and quality-evaluated databanks
Hanne S Antila , Batuhan Kav , Markus S Miettinen , Hector Martinez-Seara
The Journal of Physical Chemistry B 126 ( 23) 4169 -4183
16
2022
Evaluating Polarizable Biomembrane Simulations against Experiments
Hanne S Antila , Sneha Dixit , Batuhan Kav , Jesper J Madsen
Journal of Chemical Theory and Computation
2024
Interplay of trans-and cis-interactions of glycolipids in membrane adhesion
Batuhan Kav , Bruno Demé , Christian Gege , Motomu Tanaka
Frontiers in molecular biosciences 8 754654 -754654
4
2021
Measuring pico-Newton Forces with Lipid Anchors as Force Sensors in Molecular Dynamics Simulations
Batuhan Kav , Thomas R Weikl , Emanuel Schneck
The Journal of Physical Chemistry B 127 ( 18) 4081 -4089
2023
Disorder-to-order transition of the amyloid-β peptide upon lipid binding
Hebah Fatafta , Batuhan Kav , Bastian F Bundschuh , Jennifer Loschwitz
Biophysical chemistry 280 106700 -106700
65
2022
Effects of ion type and concentration on the structure and aggregation of the amyloid peptide A β 16− 22 β _ 16-22
Eva Smorodina , Batuhan Kav , Hebah Fatafta , Birgit Strodel
Proteins: Structure, Function, and Bioinformatics
4
2023
Does the inclusion of electronic polarisability lead to a better modelling of peptide aggregation?
Batuhan Kav , Birgit Strodel
RSC advances 12 ( 32) 20829 -20837
3
2022
A brief history of amyloid aggregation simulations
Hebah Fatafta , Mohammed Khaled , Batuhan Kav , Olujide O Olubiyi
Wiley Interdisciplinary Reviews: Computational Molecular Science 14 ( 1) e1703 -e1703
2024
Effects of ion type and concentration on the structure and aggregation of the amyloid peptide A [Formula: see text]
Eva Smorodina , Batuhan Kav , Hebah Fatafta , Birgit Strodel
Proteins