The design of linear peptides that fold as monomeric β-sheet structures
E LACROIX , T KORTEMME , M DELAPAZ , L SERRANO
Current Opinion in Structural Biology 9 ( 4) 487 -493
102
1999
Engineered ACE2 receptor traps potently neutralize SARS-CoV-2 (preprint)
Anum Glasgow , Jeff Edward Glasgow , Daniel Limonta , Paige Solomon
2020
SAT-based protein design
Tanja Kortemme , Ellen Sentovich , Andreas Kuehlmann , Noah Ollikainen
international conference on computer aided design 128 -135
7
2009
2017
Recent advances in de novo protein design: principles, methods, and applications.
Tanja Kortemme , Xingjie Pan
Journal of Biological Chemistry 296 100558 -100558
2
2021
Reply to Liu et al.: Specific mutations matter in specificity and catalysis in ACE2.
Tanja Kortemme , Jeff Glasgow , James A Wells , Anum Glasgow
Proceedings of the National Academy of Sciences of the United States of America 118 ( 15)
2021
CryoEM and AI reveal a structure of SARS-CoV-2 Nsp2, a multifunctional protein involved in key host processes
Tanja Kortemme , David Agard , Axel Brilot , Daniel Southworth
Research square
43
2021
Backbone flexibility in computational protein design
Daniel J Mandell , Tanja Kortemme
Current Opinion in Biotechnology 20 ( 4) 420 -428
91
2009
Serverification of molecular modeling applications: the Rosetta Online Server that Includes Everyone (ROSIE).
Sergey Lyskov , Fang-Chieh Chou , Shane Ó. Conchúir , Bryan S. Der
PLOS ONE 8 ( 5)
209
2013
Extending chemical perturbations of the ubiquitin fitness landscape in a classroom setting reveals new constraints on sequence tolerance
David Mavor , Kyle A. Barlow , Daniel Asarnow , Yuliya Birman
Biology Open 7 ( 7)
17
2018
Mutations designed to destabilize the receptor-bound conformation increase MICA-NKG2D association rate and affinity.
Candice S. E. Lengyel , Lindsey J. Willis , Patrick Mann , David Baker
Journal of Biological Chemistry 282 ( 42) 30658 -30666
28
2007
Symmetry recognizing asymmetry: analysis of the interactions between the C-type lectin-like immunoreceptor NKG2D and MHC class I-like ligands.
Benjamin J. McFarland , Tanja Kortemme , Shuyuarn F. Yu , David Baker
Structure 11 ( 4) 411 -422
103
2003
Simple Physical Models Connect Theory and Experiment in Protein Folding Kinetics
Eric Alm , Alexandre V. Morozov , Tanja Kortemme , David Baker
Journal of Molecular Biology 322 ( 2) 463 -476
81
2002
Macromolecular modeling and design in Rosetta: recent methods and frameworks
Christoffer Norn , Shane Ó’Conchúir , Noah Ollikainen , Sergey Ovchinnikov
Nature Methods 17 ( 7) 665 -680
321
2020
A Web Resource for Standardized Benchmark Datasets, Metrics, and Rosetta Protocols for Macromolecular Modeling and Design
Shane Ó Conchúir , Kyle A. Barlow , Roland A. Pache , Noah Ollikainen
PLOS ONE 10 ( 9) e0130433
48
2015
Structure-based prediction of the peptide sequence space recognized by natural and synthetic PDZ domains.
Colin A. Smith , Tanja Kortemme
Journal of Molecular Biology 402 ( 2) 460 -474
91
2010
Construction of a genetic multiplexer to toggle between chemosensory pathways in Escherichia coli.
Tae Seok Moon , Elizabeth J. Clarke , Eli S. Groban , Alvin Tamsir
Journal of Molecular Biology 406 ( 2) 215 -227
57
2011
A New Twist in TCR Diversity Revealed by a Forbidden αβ TCR
Christine McBeth , Audrey Seamons , Juan C. Pizarro , Sarel J. Fleishman
Journal of Molecular Biology 375 ( 5) 1306 -1319
23
2008
A simple model of backbone flexibility improves modeling of side-chain conformational variability
Gregory D. Friedland , Anthony J. Linares , Colin A. Smith , Tanja Kortemme
Journal of Molecular Biology 380 ( 4) 757 -774
60
2008
Backrub-like backbone simulation recapitulates natural protein conformational variability and improves mutant side-chain prediction.
Colin A. Smith , Tanja Kortemme
Journal of Molecular Biology 380 ( 4) 742 -756
352
2008